Manager Call 2018-03-15: Difference between revisions

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*Need to work with several groups to review their annotations:
*Need to work with several groups to review their annotations:
**Gramene (35815 annotations)
**Gramene (35815 annotations)
**2929 RCA Molecular Function annotations
***Date: 20060831
***Reference: [http://archive.gramene.org/db/literature/pub_search?ref_id=8030 GR_REF:8030]
***Manual review of mappings; can we suggest [http://wiki.geneontology.org/index.php/Inferred_from_Sequence_Model_(ISM) ISM]?
**GeneDB
**GeneDB
**EcoCyc
**EcoCyc

Revision as of 13:49, 13 March 2018


Call in info

https://stanford.zoom.us/j/754529609

Agenda

NYC Meeting Agenda

Working Groups/Projects

Expanded Set of Relations

  • Implementation requirements to meet our May goal of at least having acts_upstream_of_or_within
    • Guidelines/examples for use
      • acts upstream of: sperm motility, lipidation of ras, glycine transport -> heme biosynthesis
      • regulation: glycolysis, signaling
      • involved in: F-P links
      • make use of other F-P co-annotation
      • other ontology relations could be used to devise rules
      • PAINT annotations
    • Have a mechanism for groups to propose new rules
    • Review annotations to process and regulation of process
      • Can Mary D. generate lists for all groups, put on a webpage for review?
    • Other software support needed for this?

Protein Complexes

HTP Codes

RCA Evidence Code

  • Need to work with several groups to review their annotations:
    • Gramene (35815 annotations)
    • 2929 RCA Molecular Function annotations
      • Date: 20060831
      • Reference: GR_REF:8030
      • Manual review of mappings; can we suggest ISM?
    • GeneDB
    • EcoCyc
    • AgBase
    • AspGD
    • PAMGO_MGG

Documentation

QA/QC

Working Group Meetings

  • Quarterly?
    • Rotate between ontology and annotation (small, focused groups)
    • Test virtual meetings, but still focused on the task

Noctua

1.0 Rollout

  • Merge Tremayne's fork with Noctua-dev for further testing
  • Some outstanding issues on SAE
  • Single source file for MODs to consume

Reactome Imports

  • David, Kimberly have looked at some imports/translations
  • Ben's work looks to be potentially very useful and promising for seeding templates, models
  • Will probably require significant manual input, refinement, testing

End User Tools

GO Helpdesk

Minutes

  • On call:
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