Manager Call 2018-07-19
Regrets
- Kimberly
Pipeline
Are the files on Jenkins still valid ? http://build.berkeleybop.org/view/GAF/job/gaf-check-pombase/ This is what PomBase uses
New repo: go-announcements
Pascale: I created the repo: https://github.com/geneontology/go-announcements I have been adding the new obsoletion notices there, and I also copied some older tickets that had label 'major change' Proposed guidelines: It should be used by
- ontology editors for obsoletions and changes in terms with >100 annotations
- software developers for any changes that impact users: change in file locations, changes in file formats; instead (or in addition to?) using the go website, for eg: http://geneontology.org/article/announcement-change-go-xrefs-reactome
- what else ?
Website migration status
Laurent-Philippe, Suzi (Note that Kimberly, David and Pascale are still slowing moving content to the wiki, as discussed at the Documentation meeting in Jan 2018)
Noctua 1.1 plan
Kimberly and Seth https://docs.google.com/document/d/1p0VfgTRaYe0vTGMjMDc48Wz2HWpry_JufSS2X3dqccA/edit
- Can the Noctua 1.0 project be closed? https://github.com/orgs/geneontology/projects/6
Closing pull requests
There are a number of PR in the go-ontology repo - can we close or assign someone to help close the tickets? https://github.com/geneontology/go-ontology/pulls
The next topics were moved from the June 20th call)
From PI call
Managers should help define the tasks of the helpdesk group
Proposal: (Pascale)
- monitor helpdesk repo
- monitor Biostars and Stalk Exchange, Twitter and Facebook for GO-related questions
- FAQs
Managers should help define the tasks of the outreach group
- help new groups make annotations submissions
Topics not discussed at last meeting
- create a simple challenge form? (see noctua new user form)
- licensing and "remix" for upstream sources (e.g. Reactome)
- licensing sign-over or statement (annotation input)
- zenodo and user metadata; proposal: "active" users and cull users.yaml (possibly a small sub-group from there, about half an hour)
- Laurent-Philippe: collect information / links / contacts about the GO user communities (e.g. R/bioconductor and ?)
- (Pascale) Rules, especially taxon checks: can we have this for the July release? https://github.com/geneontology/go-annotation/issues/1928
- (Suzi/Seth) Zotero as home for collected help/starter documentation?