Manager Call 2019-07-17: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
Line 9: Line 9:


Shex and google docs are now out of sync (terminology, some rules).
Shex and google docs are now out of sync (terminology, some rules).
Chris do an overview of the shex specs.
 
Chris did an overview of the shex specs but this will further discuss in the next GO-CAM specs call.


===Questions regarding Noctua-dev vs Noctua-prod===
===Questions regarding Noctua-dev vs Noctua-prod===

Revision as of 11:46, 17 July 2019

Agenda

  • Agenda: David
  • Minutes: Laurent-Philippe

Project status

GO-CAM specs

Kimberly, Pascale, Huaiyu, Laurent-Philippe, ...

Shex and google docs are now out of sync (terminology, some rules).

Chris did an overview of the shex specs but this will further discuss in the next GO-CAM specs call.

Questions regarding Noctua-dev vs Noctua-prod

(Pascale) Background

  • Ben asked to create test models |Ticket 
  • Kimberly and Pascale created about 30 models with the 'model-copy' functionality |Test models
  • Ben, Seth, are saying that the models should have been created in Noctua-prod with a special status (since Noctua-dev is apparently not exactly the same implementation)
  • Questions
    • What is the purpose of Noctua-dev and Noctua-prod ?
    • To redo the models on prod, it would be very useful to have the model-copy functionality there as well. What is blocking exactly ?

Discussion points

(from last week...):

  • Did we decide to send out notices about GO-CAM tools releases? We need to get the spec done first.
    • Those release notes are important to let curators know of the new functionalities and bug fixes.
    • Tremayne has to go through all the gocam tickets and will get back to Kimberly to see what can be finished or not. ** Some bug fixes are not been corrected on Noctua Form 1.0 as they are implemented in Noctua Form 2.0.
    • Judith is worried that curators will lose their momentum to use Noctua Form without better communication and deliveries.
    • There seems to have different feedbacks for Noctua Form (e.g. comes up in a spreadsheet but can not search or sort - there are tickets for this) and Noctua Graph.
  • Report back from meeting with Rose Oughtred (BioGrid) about sharing data
    • They have 'phosphogrid' interaction data for S. cerevisiae and human
      • Could the human data be interesting for import into GO-CAM ? They annotate kinase activity and substrate and register the specific site. It seems they use Uniprot IDs (to confirm).
      • It's not a priority before the next GO meeting
    • This could potentially be used to capture MFs for enzymatic activities and targets
    • Suggested she work with SGD for yeast data, but what about human?
    • Priority level for this?

Minutes

Present

Judy, David, Paul, Kimberly, Chris, Seth, Pascale, Suzi, Laurent-Philippe