Manager Call 2020-02-12

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Agenda

  • Agenda: Suzi
  • Minutes: Seth
  • Present:
  • Regrets:

Discussion points

Upcoming Meetings

Caltech f2f, 24-28 Feb

GO meeting Paris, 11 (Users), 12-14 (Main), 15(SAB) May

GO meeting Baltimore, week of 5th Oct

Discussion

Release delays

Is there anything we can do to help make releases easier ?

Status of 'high priority' Projects

Google spreadsheet of the projects: https://docs.google.com/spreadsheets/d/1lZO0cf64_eufimUhEdcpiZMGEmvF6_7BW-GQWBXR3Mw/edit#gid=199463565


AmiGO search fixes

Not yet prioritized but the PIs asked to evaluate work to decide whether this will be prioritized Seth/Chris: evaluation of time - prioritization - resources


2.2 Aggregate Statistics for releases

2.3 Legacy infrastructure

Seth/Chris: next step?


3.1 Migration of MGI and WormBase annotations to Noctua

Week of Feb 24 hackaton will address that:

4.1 GO-CAM ShEx specification v1.0 completion

4.2 Integrating validation (AKA GO rules) into Minerva

4.3 Noctua/GO-CAM Curator Documentation: curation philosophy

  • Done ? Do we need to add links to this ?

4.4: Documentation: curation how-to

  • which relations to choose when - this is the main thing curators ask about

-> Kimberly in progress


4.8 Pathways2GO, including making models *activity-centric*

5.1 Deploy Noctua Search (as landing page)

5.3 Noctua onto "production" footing

8.7 Improve GO API & support the GO-CAM + documentation

Other discussion points

Loading viral and bacterial entries in NEO

https://github.com/geneontology/neo/issues/49 Prioritize + assign someone


Isoforms not loaded in AmiGO

Was there a decision NOT to include UniProt isoforms in AmiGO ? https://github.com/geneontology/go-site/issues/1105

Also - should we provide single files for each organism, rather than splitting by entity type ? http://current.geneontology.org/products/pages/downloads.html


Minutes: