Difference between revisions of "Manager Call 2020-06-17"

From GO Wiki
Jump to navigation Jump to search
m
Line 20: Line 20:


They are deriving gene sets for GO, but are using EBI and MGI for human and mouse annotations: http://baderlab.org/GeneSets#Sources.
They are deriving gene sets for GO, but are using EBI and MGI for human and mouse annotations: http://baderlab.org/GeneSets#Sources.
Gene sets download: http://download.baderlab.org/EM_Genesets/current_release/Human/UniProt/


Proposals:
Proposals:
Line 25: Line 27:
2) page on the go site to explain the above (differences & benefits from fetching annotations from GOC rather than a source; eg check, validations, etc)
2) page on the go site to explain the above (differences & benefits from fetching annotations from GOC rather than a source; eg check, validations, etc)
3) some of Bader gene sets could be of interest for QC ?
3) some of Bader gene sets could be of interest for QC ?
4) seems like GO should be providing gene sets derived from GO BP and GO MF (unsure about the use of GO CC but would be easy to generate too)


==Updated GO managers page to match the Project Org chart==
==Updated GO managers page to match the Project Org chart==

Revision as of 20:06, 16 June 2020

Agenda

  • Agenda: Laurent-Philippe
  • Minutes: David
  • Present:
  • Regrets:


Isoforms NOT in AmiGO/products

(Pascale, from feedback from Ruth) https://github.com/geneontology/go-site/issues/1105 Should they not be ?

Evidence code for inferred annotations

(Pascale, from an ontlogy ticket) https://github.com/geneontology/go-ontology/issues/19461

Bader gene sets

Approach to handle gene sets redundancy.

They are deriving gene sets for GO, but are using EBI and MGI for human and mouse annotations: http://baderlab.org/GeneSets#Sources.

Gene sets download: http://download.baderlab.org/EM_Genesets/current_release/Human/UniProt/

Proposals: 1) contact them to explain the benefits of fetching annotations from GOC instead of EBI/MGI instead of GOC 2) page on the go site to explain the above (differences & benefits from fetching annotations from GOC rather than a source; eg check, validations, etc) 3) some of Bader gene sets could be of interest for QC ? 4) seems like GO should be providing gene sets derived from GO BP and GO MF (unsure about the use of GO CC but would be easy to generate too)

Updated GO managers page to match the Project Org chart

(Pascale)