Manager Call 2020-09-23: Difference between revisions

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* Mention we'll provide a 2.0 -> 2.2 converter (Pascale : I thought GO would convert upstream data to GAF2.2 and provide a 2-2 -> 2.0 converter for groups unable to consume 2.2)
* Mention we'll provide a 2.0 -> 2.2 converter (Pascale : I thought GO would convert upstream data to GAF2.2 and provide a 2-2 -> 2.0 converter for groups unable to consume 2.2)
* Goal: December for consortium and March release for external users: can we re-consider January ?
* Goal: December for consortium and March release for external users: can we re-consider January ?
3. Spec out GPAD output from GO-CAM models
<hr>
====Noctua Imports (#3a)====
'''Action items: ''' Kimberly and David: 
* finalize annotation properties specs GPAD2.0 (metadata/history)
* produce examples of issues with GPAD output
* draft an agenda for a working meeting (~2days) to defines the requirements for GPAD output
* priorities those issues to have different milestones and a better vision on when we could work with those ? (eg when for a 80% or 90% solution)
'''Next steps: '''
1. New MGI/WB files to be QC'ed (David & Kimberly)
2. Finalize history/annotation properties GPAD2.0 specs
3. Spec out GPAD output from GO-CAM models
<hr>
====Legacy data (#6) ====
Update Laurent-Philippe
====Noctua (#3e)====
*'''ui implementations'''
** '''bug fixes'''
*** Ongoing; Tremayne is submitting some PRs to noctua-dev for testing
*** Adding: connect to existing nodes; re-use of fields in a given model
** '''ART'''
*** Tremayne has a prototype that David and Kimberly can test.  The prototype has much of the desired functionality but is not yet employing the necessary functionality from minerva which will be developed later when Ben is available to work on that.
https://github.com/geneontology/noctua-annotation-review/issues/21
*'''testing and release framework'''
<hr>
====Minerva support for noctua====
<hr>
====Pipeline (ongoing) (#4a)====
<hr>
====Pathways2GO paper (#1bi)====


==AOB==
==AOB==

Revision as of 04:48, 17 September 2020

  • Present:
  • Regrets:
  • Managers: Chris, David, Huaiyu, Laurent-Philippe, Kimberly, Pascale, Seth, Suzi, Judy, Paul


Agenda

Blocking issues/delays/changes in project scope

Anyone has blocking issues/delays/changes in project scope they need to report to managers /PIs?

Projects updates

GAF 2.2 (#4h) and GPAD/GPI 2.0 (#4i) (Kimberly)

  • where to announce ? go-friends, go-announcements, biostars and other forums (which ones)?, can we also make a list of likely impacted resources? David, VLAD, Panther, STRING, GeneMania/Gary Bader... etc
  • Mention we'll provide a 2.0 -> 2.2 converter (Pascale : I thought GO would convert upstream data to GAF2.2 and provide a 2-2 -> 2.0 converter for groups unable to consume 2.2)
  • Goal: December for consortium and March release for external users: can we re-consider January ?

3. Spec out GPAD output from GO-CAM models

Noctua Imports (#3a)

Action items: Kimberly and David:

  • finalize annotation properties specs GPAD2.0 (metadata/history)
  • produce examples of issues with GPAD output
  • draft an agenda for a working meeting (~2days) to defines the requirements for GPAD output
  • priorities those issues to have different milestones and a better vision on when we could work with those ? (eg when for a 80% or 90% solution)

Next steps: 1. New MGI/WB files to be QC'ed (David & Kimberly) 2. Finalize history/annotation properties GPAD2.0 specs 3. Spec out GPAD output from GO-CAM models

Legacy data (#6)

Update Laurent-Philippe

Noctua (#3e)

  • ui implementations
    • bug fixes
      • Ongoing; Tremayne is submitting some PRs to noctua-dev for testing
      • Adding: connect to existing nodes; re-use of fields in a given model
    • ART
      • Tremayne has a prototype that David and Kimberly can test. The prototype has much of the desired functionality but is not yet employing the necessary functionality from minerva which will be developed later when Ben is available to work on that.

https://github.com/geneontology/noctua-annotation-review/issues/21

  • testing and release framework

Minerva support for noctua

Pipeline (ongoing) (#4a)

Pathways2GO paper (#1bi)

AOB

Creating a static page for SPARQL endpoint

Mentioned in the NAR paper - this needs to be prioritized and resourced: https://github.com/geneontology/go-site/issues/1549

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