Managers 10Mar10: Difference between revisions
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* I forwarded an email from Vinod Scaria from the Mycobacterium tuberculosis annotation project. I think he has been in touch with Michelle et al (someone needs to check), but who is responsible for following up on these sorts of issues now? | * I forwarded an email from Vinod Scaria from the Mycobacterium tuberculosis annotation project. I think he has been in touch with Michelle et al (someone needs to check), but who is responsible for following up on these sorts of issues now? | ||
* What is the hiring procedure for the new person at the EBI? | * What is the hiring procedure for the new person at the EBI? | ||
* '''The upcoming GOC meeting:''' | |||
**Prioritization of some things Chris would like to discuss/present at the GO meeting. Including estimates for ideal length of time, but we can discuss these | |||
*** Cross-product / logical definitions update, go/chebi xps (15) | |||
*** GO-pathway database integration (15) | |||
*** GAF inference and Evidence codes for automated inference (5-10) | |||
*** Proposal for more streamlined addition of compositional terms (5) | |||
*** GAF2 update (5-10) | |||
*** Tighter obo-edit/protege/owl integration in CL and GO (5) | |||
*** AmiGO new features | |||
**** New search features in AmiGO (5) | |||
**** PAINT-style displays in AmiGO (5) | |||
**** Improved tree view (5) | |||
** Wish list for discussion items at the meeting | |||
*** linkages between GO complex and PRO classes | |||
*** signaling | |||
==Funded Deliverables== | ==Funded Deliverables== |
Revision as of 08:12, 10 March 2010
Participants:
Agenda: David
Minutes: Kara
Action items from previous calls
- All managers: Prepare materials for SAB
- Funded deliverables can be found in the agenda of the GOC meeting in Cambridge 2009
- 4-10 slides describing our goals and accomplishments
Discussion items
- Brief report on the Chemical workshop that we held at the EBI last week (David, Jane, Midori, Tanya)
- I forwarded an email from Vinod Scaria from the Mycobacterium tuberculosis annotation project. I think he has been in touch with Michelle et al (someone needs to check), but who is responsible for following up on these sorts of issues now?
- What is the hiring procedure for the new person at the EBI?
- The upcoming GOC meeting:
- Prioritization of some things Chris would like to discuss/present at the GO meeting. Including estimates for ideal length of time, but we can discuss these
- Cross-product / logical definitions update, go/chebi xps (15)
- GO-pathway database integration (15)
- GAF inference and Evidence codes for automated inference (5-10)
- Proposal for more streamlined addition of compositional terms (5)
- GAF2 update (5-10)
- Tighter obo-edit/protege/owl integration in CL and GO (5)
- AmiGO new features
- New search features in AmiGO (5)
- PAINT-style displays in AmiGO (5)
- Improved tree view (5)
- Wish list for discussion items at the meeting
- linkages between GO complex and PRO classes
- signaling
- Prioritization of some things Chris would like to discuss/present at the GO meeting. Including estimates for ideal length of time, but we can discuss these
Funded Deliverables
- Aim 1: We will maintain comprehensive, logically rigorous and biologically accurate ontologies
Year | Task | Status |
---|---|---|
1 | Completing is_a relations | Done |
1 | Completing part_of relations | Done |
3 | Substitution of regulates relationships | Done |
3 | Produce slim versions excluding specified relationship classes | Done? |
1 | Parse implicit Cell terms from GO and resolve | Parse done, waiting on cell ontology |
2 | Parse implicit Chemical terms from GO and resolve | Parse done, alignment in progress |
5 | Parse implicit Anatomical terms from GO and resolve | Parse done, alignment in progress |
2 | OBO-Edit that enables cross-links | Done |
3 | AmiGO that supports cross-links | |
5 | Automate inconsistency checking | Done, ongoing |
3 | Inclusion of specialized part_of & contained_in relationships in CC | Still to do |
3 | Inclusion of located_in & has_part relationships in BP | has_part-done and ongoing. located_in-still to do |
1 | Programmable access to retrieve annotations | Done |
5 | Add relationships between BP, MF, and CC | Done, ongoing |
5 | Develop tools and protocols to maintain pathways congruency | In Progress |
3 | OBO-Edit support for tracking changes to the ontology | Done |
5 | OBO-Edit interoperability support | Done? |
5 | Implementation of faster querying techniques | In progress |