Managers 27Jan10

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Participants:

Agenda:

Minutes: Jane

Action items from previous calls

  • David, Tanya, Jane: Compose wiki documentation for ontology editors, with step-by-step instructions on making cross-products - DONE.
  • Jen: Draft wiki page to summarize motivation for MF-BP links - in progress
  • Jane: will send another email to clarify that not everyone has to start using ext GO file - we're only interested in inter-ontology links DONE.
  • Midori: release first set of cross products, Jan 18 (regulation) DONE.
  • Midori: add this to GO news on Monday.
  • Midori: will create a new section in the Ontology development page for proposed content dev projects.

Discussion items

TCDB into GO

  • Asking for support letter [Jen]

Term changes and term provenance issues cont.

  • I've been making a list of the types of changes I've been making over the last couple of weeks, to see how we might want to track changes/history/rationale [Jane]

Date for GAF2.0 switch

Could the managers agree on a date for switching the primary GAF format from GAF1.0 to GAF2.0? It was originally going to be January. How about 1st of May for the new date? This would give a 4 month alert for users to update parsers (Emily)

Would Chris be happy with GOA creating a supplementary file for UniProt GAF files(primarily to store Swiss-Prot/TrEMBL DB subset information), this would fix AmiGO's issue with GOA's usage of column 1. The file would use the same format as the gene product information file that Amelia has proposed. GOA would also like to use this file to indicate when proteins are targets of the Reference Genome project and where protein annotation is complete (Emily)


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