Managers 27Jan10

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Participants:

Agenda:

Minutes: Jane

Action items from previous calls

  • David, Tanya, Jane: Compose wiki documentation for ontology editors, with step-by-step instructions on making cross-products - DONE.
  • Jen: Draft wiki page to summarize motivation for MF-BP links - in progress
  • Jane: will send another email to clarify that not everyone has to start using ext GO file - we're only interested in inter-ontology links DONE.
  • Midori: release first set of cross products, Jan 18 (regulation) DONE.
  • Midori: add this to GO news on Monday.
  • Midori: will create a new section in the Ontology development page for proposed content dev projects.

Discussion items

TCDB into GO

  • Asking for support letter [Jen]

Term changes and term provenance issues cont.

  • I've been making a list of the types of changes I've been making over the last couple of weeks, to see how we might want to track changes/history/rationale [Jane]

Date for GAF2.0 switch

Could the managers agree on a date for switching the primary GAF format from GAF1.0 to GAF2.0? It was originally going to be January. How about 1st of May for the new date? This would give a 4 month alert for users to update parsers (Emily)

GOA to create Gene Product information file to supplement GOA GAFs

Would the managers be happy if GOA were to start creating a supplementary file for UniProt GAFs (primarily to store Swiss-Prot/TrEMBL DB subset information), this would fix AmiGO's issue with GOA's usage of column 1. The file would supply all information that the proposed gene product information file (suggested by Amelia) would have. However in addition to the DB subset information, GOA would also like to use this file to indicate when proteins were annotation targets of the Reference Genome project and where protein annotation is complete (Emily)


Reference genome goals for Jan-June 2010

(Pascale)


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