Manger 19November2014

Agenda

Annotation Attribution

• Curators funded by grant will annotate for 'GO_Central' group without having to go through approvals from normal authoritative sources
• Implemented in PAINT/Protein2GO
• GO_Central annotations exported from protein2go on a weekly basis - is this feasible Tony?
• Filter out from MOD annotations
• Karen: Why filter?
• Suzi: applies to any situation when curator puts on GO_Central hat?
• Judy: scenario: when Pascale puts in a mouse annotation into Protein2GO; MGI then imports and runs QC, takes care of redundancy.
• Judy: 2 aspects. 1 removing redundancy. 2 mechanism for challenging. Where is permissions boundary?
• Suzi: from perspective of GO
• Tony: didn't know of change from RefGenome to GO_Central
• Suzi: PAINT already uses GO_Central for attribution
• Paul: GO_Central not the same as RefGenome, treated as authoritative
• Kimberley: clarification on outside your MOD: when WB does protein2go curation of Worm proteins then source=WB
• Tony: can have two sources, switch when curating outside sphere
• Suzi: you switch hat when curating not for your MOD
• Kimberley: legacy stuff? E.g. INTACT
• Tony: can go back in and change later. Or I can do in batch (possibly)
• Kimberley: protein2go already has worm anns from Ruth's group attributed to BHF. Would this be changed to GO_Central?
• Suzi/Paul: Yes?
• Chris: Sure?
• Paul: Original thinking was for GO funded curators. Don't necessarily want to remove attribution without consulting groups. At this stage just think of as GO funded curators.
• Tony: in GPAD scope for more fine-grained attribution. Curator name in properties column. For GAF all we have is AssignedBy, which is at the annotation group level
• Tony: one final thing, current p2go curators or MOD curators who want to add GO_Central to their list of available sources, send email to goa@ebi.ac.uk to set this up
• Tony: I can generate weekly GO_Central annotations, no problem. Deposited on secondary ftp site. Coordinate with Chris on getting it into svn.
• Tony: Q about integrating PAINT anns. Pick up from PAINT files in pre-sub paint directory. EXCEPT for MGI, TAIR and ZFIN, we pick from these MODs.
• Paul: PAINT repo is the definitive source
• Tony: good, makes it easier
• Tony: will GO_Central anns ever filter back into PAINT files
• All/Karen: no. Will not be duplicated
• Tony: problem same attributions from different sources. Non-PAINT GO_Central don't want to pick up from external files
• Suzi: none of these experimental annotations go into PAINT GAF files. If experiment annotation is used in evidence, doesn't get re-exported
• Tony: seed ann never sees light of day in PAINT files?
• Suzi/Paul: Correct
• Tony: good.
• Tony: confirm what will appear in PAINT GAFs
• Suzi: GO_Central

Trello Board

• • https://trello.com/b/IdtTLGEt/go-priorities