Mappings of GO Evidence Code + GOREF combinations to ECO
Out of date
Suggestions for mapping between GO evidence codes and ECO ids.
| GO evidence code | GO_REF | GO_REF name | ECO code | ECO Name | Comment |
| IEA | ECO:0000203 | automatic assertion | |||
| IEA | GO_REF:0000040 | Gene Ontology annotation based on the automatic assignment of UniProtKB Subcellular Location terms in UniProtKB/TrEMBL entries. | ECO:0000323 | imported automatically asserted information used in automatic assertion | |
| IEA | GO_REF:0000038 | Gene Ontology annotation based on automatic assignment of UniProtKB keywords in UniProtKB/TrEMBL entries. | ECO:0000323 | imported automatically asserted information used in automatic assertion | |
| IEA | GO_REF:0000039 | Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries. | ECO:0000322 | imported manually asserted information used in automatic assertion | |
| IEA | GO_REF:0000037 | Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. | ECO:0000322 | imported manually asserted information used in automatic assertion | |
| IEA | GO_REF:0000049 | Automatic transfer of experimentally verified manual GO annotation data to fungal orthologs using Ensembl Compara. | ECO:0000265 | sequence orthology evidence used in automatic assertion | |
| IEA | GO_REF:0000002 | Gene Ontology annotation through association of InterPro records with GO terms. | ECO:0000256 | match to a sequence model used in automatic assertion | (inline with A.Bridge suggestion, see SF:3401500) |
| IEA | GO_REF:0000020 | Electronic Gene Ontology annotations created by transferring manual GO annotations between orthologous microbial proteins | ECO:0000265 | sequence orthology evidence used in automatic assertion | |
| IEA | GO_REF:0000004 | Gene Ontology annotation based on Swiss-Prot keyword mapping. | ECO:0000203 | automatic assertion | !!! Need more granular child |
| IEA | GO_REF:0000023 | Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping. | ECO:0000203 | automatic assertion | !!! Need more granular child |
| IEA | GO_REF:0000019 | Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara | ECO:0000265 | sequence orthology evidence used in automatic assertion | |
| IEA | GO_REF:0000035 | Automatic transfer of experimentally verified manual GO annotation data to plant orthologs using Ensembl Compara | ECO:0000265 | sequence orthology evidence used in automatic assertion | |
| IEA | GO_REF:0000003 | Gene Ontology annotation based on Enzyme Commission mapping. | ECO:0000203 | automatic assertion | !!! Need more granular child |
| ND | ECO:0000307 | no biological data found used in manual assertion | |||
| EXP | ECO:0000269 | experimental evidence used in manual assertion | |||
| IDA | ECO:0000314 | direct assay result used in manual assertion | |||
| IMP | ECO:0000315 | mutant phenotype used in manual assertion | |||
| IGI | ECO:0000316 | genetic interaction experiment used in manual assertion | |||
| IEP | ECO:0000270 | expression evidence used in manual assertion | |||
| IPI | ECO:0000021 | physical interaction | !!! Need a manual child - has been requested - see SF:3409858 | ||
| TAS | ECO:0000304 | traceable author statement used in manual assertion | |||
| NAS | ECO:0000303 | non-traceable author statement used in manual assertion | |||
| IC | ECO:0000305 | curator inference used in manual assertion | |||
| ISS | GO_REF:0000027 | BLAST search criteria for ISS assignment in PAMGO_GAT | ECO:0000031 | protein BLAST evidence used in manual assertion | |
| ISS | GO_REF:0000011 | Hidden Markov Models (TIGR) | ECO:0000255 | match to sequence model used in manual assertion | |
| ISS | GO_REF:0000012 | Pairwise alignment (TIGR) | ECO:0000031 | protein BLAST evidence used in manual assertion | |
| ISS | GO_REF:0000018 | dictyBase 'Inferred from Electronic Annotation (BLAST method)' | ECO:0000031 | protein BLAST evidence used in manual assertion | |
| ISS | ECO:0000250 | sequence similarity used in manual assertion | |||
| ISO | ECO:0000266 | sequence orthology evidence used in manual assertion | |||
| ISA | ECO:0000247 | sequence alignment evidence used in manual assertion | |||
| ISM | ECO:0000255 | match to sequence model used in manual assertion | |||
| IGC | GO_REF:0000025 | Operon structure as IGC evidence | ECO:0000084 | gene neighbors | !!! Need a manual child |
| IGC | ECO:0000317 | genomic context used in manual assertion | |||
| IBA | ECO:0000318 | biological aspect of ancestor used in manual assertion | |||
| IBD | ECO:0000319 | biological aspect of descendant used in manual assertion | |||
| IKR | ECO:0000320 | phylogenetic determination of loss of key residues used in manual | |||
| IRD | ECO:0000321 | rapid divergence from ancestral sequence used in manual assertion | |||
| RCA | ECO:0000245 | computational combinatorial analysis used in manual assertion | |||
| IMR | ECO:0000320 | phylogenetic determination of loss of key residues used in manual | |||
| assertion | |||||