Mar2008 ontology report: Difference between revisions
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(New page: Ontology Development & GO Editorial Office Report - March 2008 ===I. Ontology Development=== *SourceForge **Items opened: **Items closed: ***GO Eds: ***MOD curators: (details in Appen...) |
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**Function-process pilot projects under way (http://wiki.geneontology.org/index.php/Function-Process_Links) | **Function-process pilot projects under way (http://wiki.geneontology.org/index.php/Function-Process_Links) | ||
***electron transport | ***electron transport | ||
***glycolysis & TCA cycle | ***glycolysis & TCA cycle (Harold) | ||
**Lipoprotein-related process and component terms - small collaboration with UCL and Reactome | **Lipoprotein-related process and component terms - small collaboration with UCL and Reactome (Midori) | ||
**Signal transduction overhaul | **Signal transduction overhaul (Jen doing initial work and finding experts) | ||
**Additional transport work (Jen plus experts including Steve Oliver's group) | |||
**Initial exploration of plant processes affected by herbicides | |||
**Various SourceForge items | **Various SourceForge items | ||
Revision as of 07:17, 1 April 2008
Ontology Development & GO Editorial Office Report - March 2008
I. Ontology Development
- SourceForge
- Items opened:
- Items closed:
- GO Eds:
- MOD curators: (details in Appendix 1)
- GO Ed/MOD collaborations: (details in Appendix 2)
- Items still open:
- assigned, GO Eds:
- assigned, MOD curators:
- unassigned:
- Content items resolved
- 'Regulates' relationships live (yay!) (David, Tanya, Chris, et al.)
- Electron transport reorganization live (Jen and electron transport wg)
- Sporulation terms reorganized (connected with the last of the sensu revamp, http://wiki.geneontology.org/index.php/Sporulation_Meeting_Notes)
- Several SourceForge items resolved
- Content items in progress
- Follow-up to 'regulates' work -- David and Tanya are still correcting errors reported by Chris' QC scripts; error reports will continue to be generated at least until OBO-Edit 2.0 is released (http://wiki.geneontology.org/index.php/Regulation_Main_Page).
- Function-process pilot projects under way (http://wiki.geneontology.org/index.php/Function-Process_Links)
- electron transport
- glycolysis & TCA cycle (Harold)
- Lipoprotein-related process and component terms - small collaboration with UCL and Reactome (Midori)
- Signal transduction overhaul (Jen doing initial work and finding experts)
- Additional transport work (Jen plus experts including Steve Oliver's group)
- Initial exploration of plant processes affected by herbicides
- Various SourceForge items
- Switched to new go/ontology/directory structure ( Ontology_CVS_Directory_Layout_Overhaul )
See monthly report in CVS for ontology statistics.
II. GO Editorial Office activities not represented in part I
- Jane's back!
- Amelia is preparing for another stint at Berkeley
- OBO-Edit working group:
- More bug testing and documentation for OBO-Edit 2.0 (it never ends ...)
- Advocacy/outreach
- AmiGO release to use 'regulates'
- Meetings
- GO talk and AmiGO demo at EBI training roadshow, Ghent (Jen)
- Workshop on "Making Small Facts Travel: Labels, Packages and Vehicles", London School of Economics (Midori)
- Anything else
- GO bibliography has 1876 entries
Appendix 1: MOD curators' SF items Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved (Note: "MOD curator" is shorthand for any non-GO-Ed curator)