Mar2008 ontology report: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
mNo edit summary
 
(3 intermediate revisions by the same user not shown)
Line 3: Line 3:
===I. Ontology Development===
===I. Ontology Development===
*SourceForge
*SourceForge
**Items opened:  
**Items opened: 56
**Items closed:  
**Items closed: 48
***GO Eds:  
***GO Eds: 32
***MOD curators: (details in Appendix 1)
***MOD curators: 4 (details in Appendix 1)
***GO Ed/MOD collaborations: (details in Appendix 2)
***GO Ed/MOD collaborations: 12 (details in Appendix 2)
**Items still open:  
**Items still open: 281
***assigned, GO Eds:  
***assigned, GO Eds: 56
***assigned, MOD curators:  
***assigned, MOD curators: 63
***unassigned:  
***unassigned: 162


*Content items resolved
*Content items resolved
Line 29: Line 29:
**Initial exploration of plant processes affected by herbicides
**Initial exploration of plant processes affected by herbicides
**Various SourceForge items
**Various SourceForge items
*IMG mapping update in progress (Jane)


*Switched to new go/ontology/directory structure ( [[Ontology_CVS_Directory_Layout_Overhaul]] )
*Switched to new go/ontology/directory structure ( [[Ontology_CVS_Directory_Layout_Overhaul]] )
Line 40: Line 42:
*OBO-Edit working group:
*OBO-Edit working group:
**More bug testing and documentation for OBO-Edit 2.0 (it never ends ...)
**More bug testing and documentation for OBO-Edit 2.0 (it never ends ...)
**Jen contributing to programming (e.g. GUI for obomerge)


*Advocacy/outreach
*Advocacy/outreach
**AmiGO release to use 'regulates'
**AmiGO release to use 'regulates'
**GO demo for WTGC master's students
**Discussion with Steve Oliver on Aspergillus annotation jamboree


*Meetings
*Meetings
Line 49: Line 54:


*Anything else
*Anything else
**Chapter featuring GO and new AmiGO in "Bioinformatics for Tropical Disease Research: A Practical and Case-Study Approach" (Jane and Matt Berriman; http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=bioinfo.TOC&depth=2)
**GO bibliography has 1876 entries
**GO bibliography has 1876 entries


<pre>
<pre>
Appendix 1: MOD curators' SF items
Appendix 1: MOD curators' SF items
1863992 David, Tanya
1912005 David
1929541 David
1929546 David, Tanya




Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved
Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved
1192485 Harold, Val
1807790 Jim
1881722 sporulation group
1894620 Peter
1898404 Chris, Alex, David
1901792 Karen C
1908887 Cindy
1909714 Rama
1911038 Alex
1911964 Rama, Val
1916944 Julie
1929533 Alex




Line 62: Line 84:


[[Combined_Ontology_Development_and_GO_Editorial_Office_reports|Back to list]]
[[Combined_Ontology_Development_and_GO_Editorial_Office_reports|Back to list]]
[[Category:Reports]]

Latest revision as of 07:08, 2 April 2009

Ontology Development & GO Editorial Office Report - March 2008

I. Ontology Development

  • SourceForge
    • Items opened: 56
    • Items closed: 48
      • GO Eds: 32
      • MOD curators: 4 (details in Appendix 1)
      • GO Ed/MOD collaborations: 12 (details in Appendix 2)
    • Items still open: 281
      • assigned, GO Eds: 56
      • assigned, MOD curators: 63
      • unassigned: 162
  • Content items resolved
  • Content items in progress
    • Follow-up to 'regulates' work -- David and Tanya are still correcting errors reported by Chris' QC scripts; error reports will continue to be generated at least until OBO-Edit 2.0 is released (http://wiki.geneontology.org/index.php/Regulation_Main_Page).
    • Function-process pilot projects under way (http://wiki.geneontology.org/index.php/Function-Process_Links)
      • electron transport
      • glycolysis & TCA cycle (Harold)
    • Lipoprotein-related process and component terms - small collaboration with UCL and Reactome (Midori)
    • Signal transduction overhaul (Jen doing initial work and finding experts)
    • Additional transport work (Jen plus experts including Steve Oliver's group)
    • Initial exploration of plant processes affected by herbicides
    • Various SourceForge items
  • IMG mapping update in progress (Jane)

See monthly report in CVS for ontology statistics.

II. GO Editorial Office activities not represented in part I

  • Jane's back!
  • Amelia is preparing for another stint at Berkeley
  • OBO-Edit working group:
    • More bug testing and documentation for OBO-Edit 2.0 (it never ends ...)
    • Jen contributing to programming (e.g. GUI for obomerge)
  • Advocacy/outreach
    • AmiGO release to use 'regulates'
    • GO demo for WTGC master's students
    • Discussion with Steve Oliver on Aspergillus annotation jamboree
  • Meetings
    • GO talk and AmiGO demo at EBI training roadshow, Ghent (Jen)
    • Workshop on "Making Small Facts Travel: Labels, Packages and Vehicles", London School of Economics (Midori)
Appendix 1: MOD curators' SF items
1863992 David, Tanya
1912005 David
1929541 David
1929546 David, Tanya


Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved
1192485 Harold, Val
1807790 Jim
1881722 sporulation group
1894620 Peter
1898404 Chris, Alex, David
1901792 Karen C
1908887 Cindy
1909714 Rama
1911038 Alex
1911964 Rama, Val
1916944 Julie
1929533 Alex


(Note: "MOD curator" is shorthand for any non-GO-Ed curator)

Back to list

Retrieved from "https://wiki.geneontology.org/index.php?title=Mar2008_ontology_report&oldid=19419"