Meeting Notes 3

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Nematode development

negative regulation of vulval development (sensu Nematoda)
positive regulation of vulval development (sensu Nematoda)
regulation of vulval development (sensu Nematoda)
vulval development (sensu Nematoda)
tail tip morphogenesis (sensu Nematoda)

People:
Kimberly
Doug?
David

Questions:

What is the distinguishing feature of the anatomical structure vulva between species?
Do we want a term just called vulval development?
Can we handle this by making cross references to anatomical dictionaries?
For tail tip morph, do we even need the sensu Nematode?

Plan


spores

spore wall assembly (sensu Bacteria)
spore wall assembly (sensu Fungi)

People:

Val
Maria Costanzo
Jim Hu
Michelle
Midori

Questions:

Same question as cell walls.
What are the distinguishing features of the walls?
or What are the distinguishing features of the assembly of the walls?


Plan:


Chromosome

chromosome organization and biogenesis (sensu Bacteria)
chromosome organization and biogenesis (sensu Eukaryota)

People:

Michelle
Jim Hu
Eurie

Questions:

What are the distinguishing features?
Do we lump mitochondrial and plastid with bacterial?

Plan:


cell polarity

establishment and/or maintenance of cell polarity (sensu Fungi)
establishment of cell polarity (sensu Fungi)
maintenance of cell polarity (sensu Fungi)

People:

David
Midori
Rex

Questions:

Plan:

Merge these terms with their non-sensu parents. Fungal cell polarity is the model system for everything on polarity.

neural rod

neural rod cavitation (sensu Teleost)
neural rod formation (sensu Teleost)


People:

Doug
David

Questions:

How do we distinguish neural rods in Teleosts and other things. Does anything else have neural rods?


Plan:


gastrulation

gastrulation (sensu Vertebrata)
gastrulation (sensu Mammalia)


People:

David
Doug
Victoria

Questions:

What distinguishes mammalian gastrulation from other organisms?

Plan:

Find distinguishing feature or merge terms.


pigment

pigment cell differentiation (sensu Nematoda and Protostomia)
pigment cell differentiation (sensu Vertebrata)

People:

Kimberly
David
Doug
Victora
Susan Tweedie
Becky Foulger

Questions:

Should we have a sensu designation or should we just enumerate the types of pigment cells underneath the parent pigment term.
Look to the cell ontology for guidance.

Plan:


larval development

larval development (sensu Amphibia)
larval development (sensu Nematoda)


People:

Questions:

Plan:


genderization

hermaphrodite germ-line sex determination (sensu Nematoda)
feminization of hermaphroditic germ-line (sensu Nematoda)
masculinization of hermaphroditic germ-line (sensu Nematoda)
hermaphrodite somatic sex determination (sensu Nematoda)
feminization of hermaphrodite soma (sensu Nematoda)
masculinization of hermaphrodite soma (sensu Nematoda)


People:

Questions:

Plan:


spores

sporulation (sensu Bacteria)
sporulation (sensu Fungi)
spore wall (sensu Fungi)
spore development (sensu Magnoliophyta)
invasive growth (sensu Saccharomyces)

People:

Questions:
Ask Chris Brett if he knows difference between plant, bacterial, and fungal cell walls. Also relevant to spore walls. [Jen]

Plan:


proteasome

proteasome core complex (sensu Eukaryota)
cytosolic proteasome core complex (sensu Eukaryota)
proteasome regulatory particle (sensu Eukaryota)
cytosolic proteasome regulatory particle (sensu Eukaryota)
proteasome regulatory particle, base subcomplex (sensu Eukaryota)
cytosolic proteasome regulatory particle, base subcomplex (sensu Eukaryota)
proteasome regulatory particle, lid subcomplex (sensu Eukaryota)
cytosolic proteasome regulatory particle, lid subcomplex (sensu Eukaryota)
proteasome complex (sensu Eukaryota)
cytosolic proteasome complex (sensu Eukaryota)
proteasome core complex (sensu Bacteria)
proteasome core complex, alpha-subunit complex (sensu Eukaryota)
cytosolic proteasome core complex, alpha-subunit complex (sensu Eukaryota)
proteasome core complex, beta-subunit complex (sensu Eukaryota)
cytosolic proteasome core complex, beta-subunit complex (sensu Eukaryota)
proteasome regulatory particle (sensu Bacteria)


People:

Questions:

Plan:



cytosolic ribosome

cytosolic large ribosomal subunit (sensu Eukaryota)
cytosolic large ribosomal subunit (sensu Archaea)
cytosolic large ribosomal subunit (sensu Bacteria)
cytosolic ribosome (sensu Archaea)
cytosolic ribosome (sensu Bacteria)
cytosolic ribosome (sensu Eukaryota)

cytosolic small ribosomal subunit (sensu Archaea)
cytosolic small ribosomal subunit (sensu Bacteria)
cytosolic small ribosomal subunit (sensu Eukaryota)


People:

Questions:

Plan:


NADH and reaction centre

NADH dehydrogenase complex (plastoquinone) (sensu Cyanobacteria)
NADH dehydrogenase complex (quinone) (sensu Bacteria)
NADH dehydrogenase complex (ubiquinone) (sensu Bacteria)
reaction center (sensu ProteoBacteria)


People:

Questions:

Plan:



other

plasmid partitioning (sensu Bacteria)
somitomeric trunk muscle development (sensu Mammalia)
otolith mineralization (sensu Actinopterygii)
otolith mineralization (sensu Tetrapoda)
outer membrane biogenesis (sensu ProteoBacteria)


People:

Questions:

Plan: