Difference between revisions of "Methane biosynthesis"

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PMID : 16348788, 18575848, 19191870,  
PMID : 16348788, 18575848, 19191870,  
[GOC:MENGO_EP]
====GO:XXXXXX78 : Methanopterin biosynthetic process====
namespace: biological_process
def:  The chemical reactions and pathways resulting in the formation of methanopterin, an N-[1′-(2″-amino-4″-hydroxy-7″- methyl-6″- pteridinyl)ethyl]-4-[2′,3′,4′,5′- tetrahydroxypent-1′- yl (5′→1″) O-α-ribofuranosyl-5″-phosphoric acid] aniline, in which the phosphate group is esterified with α-hydroxyglutaric acid.
is_a : GO:0042559 pteridine-containing compound biosynthetic process
PMID : 6319137
[GOC:MENGO_EP]
====GO:XXXXXX79 : Tetrahydromethanopterin biosynthetic process====
namespace: biological_process
def:  The chemical reactions and pathways resulting in the formation of tetrahydromethanopterin (H4MPT), an (2S)-2-[[(2R,3S,4R,5S)-5-[(2R,3S,4S)-5-[4-[[(1R)-1-[(7S)-2-amino-7-methyl-4-oxo-5,6,7,8-tetrahydro-1H-pteridin-6-yl]ethyl]amino]phenyl]-2,3,4-trihydroxypentoxy]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxypentanedioic acid
is_a : GO:0042559 pteridine-containing compound biosynthetic process
PMID : 6547718, 15028691, 14973120
[GOC:MENGO_EP]
====GO:XXXXXX80 : Methanofuran biosynthetic process====
namespace: biological_process
def:  The chemical reactions and pathways resulting in the formation of methanofuran, a 7-[[5-[[5-[2-[4-[[5-(aminomethyl)furan-3-yl]methoxy]phenyl]ethylamino]-1-hydroxy-1,5-dioxopentan-2-yl]amino]-1-hydroxy-1,5-dioxopentan-2-yl]amino]-7-oxoheptane-1,3,4-tricarboxylic acid
is_a: GO:0018130 : Heterocyclic biosynthetic process
PMID :  3166985, 1517208, 12013276
[GOC:MENGO_EP]
====GO:XXXXXX81 : Coenzyme F420 biosynthetic process====
namespace: biological_process
def:  The chemical reactions and pathways resulting in the formation of coenzyme F420, a 2-[[5-hydroxy-4-[2-[hydroxy-[2,3,4-trihydroxy-5-(2,4,8-trioxo-1H-pyrimido[4,5-b]quinolin-10-yl)pentoxy]phosphoryl]oxypropanoylamino]-5-oxopentanoyl]amino]pentanedioic acid.
is_a: GO:0042727 : flavin-containing compound biosynthetic process
PMID :  11717263, 11948155, 11535063, 11888293, 12909715, 16585745, 18260642,
[GOC:MENGO_EP]
====GO:XXXXXX82 : Coenzyme F420-dependent metabolic process====
namespace: biological_process
def:  The chemical reactions and pathways involving an enzyme cofactor consisting of coenzyme F420, a deazaflavin derivative, which involves in two-electron transfer redox reactions.
Is_a: GO:0006732 : coenzyme metabolic process
PMID :  20534465
[GOC:MENGO_EP]
====GO:XXXXXX83 : Coenzyme F420-dependent anabolic process====
namespace: biological_process
def:  The chemical reactions and pathways involving an enzyme cofactor consisting of coenzyme F420, a deazaflavin derivative, in the synthesis of a molecule such as in methane biosynthesis.
part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process
PMID :  20534465
[GOC:MENGO_EP]
====GO:XXXXXX84 : Coenzyme F420-dependent catabolic process====
namespace: biological_process
def:  The chemical reactions and pathways involving an enzyme cofactor consisting of coenzyme F420, a deazaflavin derivative, in the degradation of a molecule such as in aflatoxin and picric acid degradations.
part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process
PMID :  20807200, 21038477, 10217752


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Revision as of 12:39, 22 June 2011

Working Group Members


Endang_06/22/11

GO:XXXXXX71 : Methanogenesis from formate

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including formic acid.

part_of : GO:0015948! Methanogenesis

PMID : 6769911, 16346087, 2687241

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GO:XXXXXX72 : Methanogenesis from monomethylamine

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including monomethylamine.

part_of : GO:0015948! Methanogenesis

PMID : 16346215

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GO:XXXXXX73 : Methanogenesis from dimethylamine

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including dimethylamine.

part_of : GO:0015948! Methanogenesis

PMID : 16346215

[GOC:MENGO_EP]


GO:XXXXXX73 : Methanogenesis from trimethylamine

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including trimethylamine.

part_of : GO:0015948! Methanogenesis

PMID : 16346215

[GOC:MENGO_EP]


GO:XXXXXX74 : Methanogenesis from dimethysulfide

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including dimethylsulfide.

part_of : GO:0015948! Methanogenesis

PMID : 16347202

[GOC:MENGO_EP]


GO:XXXXXX75 : Methanogenesis from dimethydisulfide

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including dimethyldisulfide.

part_of : GO:0015948! Methanogenesis

PMID : 16347202

[GOC:MENGO_EP]


GO:XXXXXX76 : Methanogenesis from methanethiol

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including methanethiol.

part_of : GO:0015948! Methanogenesis

PMID : 16347202

[GOC:MENGO_EP]


GO:XXXXXX77 : Methanogenesis from carbonmonoxide

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including carbonmonoxide.

part_of : GO:0015948! Methanogenesis

PMID : 16348788, 18575848, 19191870,

[GOC:MENGO_EP]


GO:XXXXXX78 : Methanopterin biosynthetic process

namespace: biological_process

def: The chemical reactions and pathways resulting in the formation of methanopterin, an N-[1′-(2″-amino-4″-hydroxy-7″- methyl-6″- pteridinyl)ethyl]-4-[2′,3′,4′,5′- tetrahydroxypent-1′- yl (5′→1″) O-α-ribofuranosyl-5″-phosphoric acid] aniline, in which the phosphate group is esterified with α-hydroxyglutaric acid.

is_a : GO:0042559 pteridine-containing compound biosynthetic process

PMID : 6319137

[GOC:MENGO_EP]


GO:XXXXXX79 : Tetrahydromethanopterin biosynthetic process

namespace: biological_process

def: The chemical reactions and pathways resulting in the formation of tetrahydromethanopterin (H4MPT), an (2S)-2-[[(2R,3S,4R,5S)-5-[(2R,3S,4S)-5-[4-[[(1R)-1-[(7S)-2-amino-7-methyl-4-oxo-5,6,7,8-tetrahydro-1H-pteridin-6-yl]ethyl]amino]phenyl]-2,3,4-trihydroxypentoxy]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxypentanedioic acid

is_a : GO:0042559 pteridine-containing compound biosynthetic process

PMID : 6547718, 15028691, 14973120

[GOC:MENGO_EP]


GO:XXXXXX80 : Methanofuran biosynthetic process

namespace: biological_process

def: The chemical reactions and pathways resulting in the formation of methanofuran, a 7-[[5-[[5-[2-[4-[[5-(aminomethyl)furan-3-yl]methoxy]phenyl]ethylamino]-1-hydroxy-1,5-dioxopentan-2-yl]amino]-1-hydroxy-1,5-dioxopentan-2-yl]amino]-7-oxoheptane-1,3,4-tricarboxylic acid

is_a: GO:0018130 : Heterocyclic biosynthetic process

PMID : 3166985, 1517208, 12013276

[GOC:MENGO_EP]


GO:XXXXXX81 : Coenzyme F420 biosynthetic process

namespace: biological_process

def: The chemical reactions and pathways resulting in the formation of coenzyme F420, a 2-[[5-hydroxy-4-[2-[hydroxy-[2,3,4-trihydroxy-5-(2,4,8-trioxo-1H-pyrimido[4,5-b]quinolin-10-yl)pentoxy]phosphoryl]oxypropanoylamino]-5-oxopentanoyl]amino]pentanedioic acid.

is_a: GO:0042727 : flavin-containing compound biosynthetic process

PMID : 11717263, 11948155, 11535063, 11888293, 12909715, 16585745, 18260642,

[GOC:MENGO_EP]


GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

namespace: biological_process

def: The chemical reactions and pathways involving an enzyme cofactor consisting of coenzyme F420, a deazaflavin derivative, which involves in two-electron transfer redox reactions.

Is_a: GO:0006732 : coenzyme metabolic process

PMID : 20534465

[GOC:MENGO_EP]


GO:XXXXXX83 : Coenzyme F420-dependent anabolic process

namespace: biological_process

def: The chemical reactions and pathways involving an enzyme cofactor consisting of coenzyme F420, a deazaflavin derivative, in the synthesis of a molecule such as in methane biosynthesis.

part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

PMID : 20534465

[GOC:MENGO_EP]


GO:XXXXXX84 : Coenzyme F420-dependent catabolic process

namespace: biological_process

def: The chemical reactions and pathways involving an enzyme cofactor consisting of coenzyme F420, a deazaflavin derivative, in the degradation of a molecule such as in aflatoxin and picric acid degradations.

part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

PMID : 20807200, 21038477, 10217752

[GOC:MENGO_EP]