Methane biosynthesis

Working Group Members

Endang_06/22/11

GO:XXXXXX71 : Methanogenesis from formate

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including formic acid.

part_of : GO:0015948! Methanogenesis

PMID : 6769911, 16346087, 2687241

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GO:XXXXXX72 : Methanogenesis from monomethylamine

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including monomethylamine.

part_of : GO:0015948! Methanogenesis

PMID : 16346215

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GO:XXXXXX73 : Methanogenesis from dimethylamine

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including dimethylamine.

part_of : GO:0015948! Methanogenesis

PMID : 16346215

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GO:XXXXXX73 : Methanogenesis from trimethylamine

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including trimethylamine.

part_of : GO:0015948! Methanogenesis

PMID : 16346215

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GO:XXXXXX74 : Methanogenesis from dimethysulfide

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including dimethylsulfide.

part_of : GO:0015948! Methanogenesis

PMID : 16347202

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GO:XXXXXX75 : Methanogenesis from dimethydisulfide

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including dimethyldisulfide.

part_of : GO:0015948! Methanogenesis

PMID : 16347202

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GO:XXXXXX76 : Methanogenesis from methanethiol

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including methanethiol.

part_of : GO:0015948! Methanogenesis

PMID : 16347202

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GO:XXXXXX77 : Methanogenesis from carbonmonoxide

namespace: biological_process

def: The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including carbonmonoxide.

part_of : GO:0015948! Methanogenesis

PMID : 16348788, 18575848, 19191870,

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GO:XXXXXX78 : Methanopterin biosynthetic process

namespace: biological_process

def: The chemical reactions and pathways resulting in the formation of methanopterin, an N-[1′-(2″-amino-4″-hydroxy-7″- methyl-6″- pteridinyl)ethyl]-4-[2′,3′,4′,5′- tetrahydroxypent-1′- yl (5′→1″) O-α-ribofuranosyl-5″-phosphoric acid] aniline, in which the phosphate group is esterified with α-hydroxyglutaric acid.

is_a : GO:0042559 pteridine-containing compound biosynthetic process

PMID : 6319137

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GO:XXXXXX79 : Tetrahydromethanopterin biosynthetic process

namespace: biological_process

def: The chemical reactions and pathways resulting in the formation of tetrahydromethanopterin (H4MPT), an (2S)-2-[[(2R,3S,4R,5S)-5-[(2R,3S,4S)-5-[4-[[(1R)-1-[(7S)-2-amino-7-methyl-4-oxo-5,6,7,8-tetrahydro-1H-pteridin-6-yl]ethyl]amino]phenyl]-2,3,4-trihydroxypentoxy]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxypentanedioic acid

is_a : GO:0042559 pteridine-containing compound biosynthetic process

PMID : 6547718, 15028691, 14973120

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GO:XXXXXX80 : Tetrahydromethanopterin metabolic process

namespace: biological_process

def: The chemical reactions and pathways involving tetrahydromethanopterin, a coenzyme involved in the biosynthesis of methane by methanogenic archaea.

Is_a: GO:0006732 : coenzyme metabolic process

PMID : 6547718, 2403564, 7852356, 11265475

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GO:XXXXXX81 : Methanofuran biosynthetic process

namespace: biological_process

def: The chemical reactions and pathways resulting in the formation of methanofuran, a 7-[[5-[[5-[2-[4-[[5-(aminomethyl)furan-3-yl]methoxy]phenyl]ethylamino]-1-hydroxy-1,5-dioxopentan-2-yl]amino]-1-hydroxy-1,5-dioxopentan-2-yl]amino]-7-oxoheptane-1,3,4-tricarboxylic acid

is_a: GO:0018130 : Heterocyclic biosynthetic process

PMID : 3166985, 1517208, 12013276, 3170480

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GO:XXXXXX82 : Methanofuran metabolic process

namespace: biological_process

def: The chemical reactions and pathways involving methanofuran, a coenzyme involved in the biosynthesis of methane by methanogenic archaea.

Is_a: GO:0006732 : coenzyme metabolic process

PMID : 3922409, 12102556

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GO:XXXXXX83 : Coenzyme F420 biosynthetic process

namespace: biological_process

def: The chemical reactions and pathways resulting in the formation of coenzyme F420, a 2-[[5-hydroxy-4-[2-[hydroxy-[2,3,4-trihydroxy-5-(2,4,8-trioxo-1H-pyrimido[4,5-b]quinolin-10-yl)pentoxy]phosphoryl]oxypropanoylamino]-5-oxopentanoyl]amino]pentanedioic acid.

is_a: GO:0042727 : flavin-containing compound biosynthetic process

PMID : 11717263, 11948155, 11535063, 11888293, 12909715, 16585745, 18260642,

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GO:XXXXXX84 : Coenzyme F420-dependent metabolic process

namespace: biological_process

def: The chemical reactions and pathways involving coenzyme F420, a coenzyme involved in the biosynthesis of methane by methanogenic archaea and many other reaction in Bacteria and Eukarya.

Is_a: GO:0006732 : coenzyme metabolic process

PMID : 21038477,

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GO:XXXXXX85 : Coenzyme F420-dependent anabolic process

namespace: biological_process

def: The chemical reactions and pathways involving coenzyme F420, a deazaflavin derivative, in the synthesis of a molecule such as in methane biosynthesis.

part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

PMID : 20534465

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GO:XXXXXX86 : Coenzyme F420-dependent catabolic process

namespace: biological_process

def: The chemical reactions and pathways involving an enzyme cofactor consisting of coenzyme F420, a deazaflavin derivative, in the degradation of a molecule such as in aflatoxin and picric acid degradations.

part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

PMID : 20807200, 21038477, 10217752

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GO:XXXXXX87 : Coenzyme F420-dependent glucose-6-phosphate dehydrogenase activity

namespace: molecular_function

def: A biochemical reaction involving coenzyme F420, a deazaflavin derivative, in the conversion of glucose-6-phosphate to 6-phosphogluconolactone.

part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

PMID : 8631674, 8997717, 9555906, 18434308

E.C. EC 1.1.99.34

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GO:XXXXXX88 : Coenzyme F420-dependent nitroreductase activity

namespace: molecular_function

def: A biochemical reaction involving coenzyme F420, a deazaflavin derivative, in the conversion of a nitroimidazopyran (such as PA824, a new antituberculosis drug) to its nitronic acid derivative.

part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

PMID : 16387854, 19039139.

E.C.

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GO:XXXXXX89 : Coenzyme F420-dependent aflatoxin reductase activity

namespace: molecular_function

def: A biochemical reaction involving coenzyme F420, a deazaflavin derivative, in the reduction of furanocumarin moiety of aflatoxin.

part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

PMID : 20807200, 21038477

E.C. 1.---

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GO:XXXXXX90 : Coenzyme F420-dependent NADP oxidoreductase activity

namespace: molecular_function

def: A biochemical reaction involving a reduced form of coenzyme F420 (F420H2) to convert NADP+ to NADP(H).

part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

PMID : 9821972, 11109487, 11726492

E.C. 1.6.8.-

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GO:XXXXXX91 : Coenzyme F420-dependent deoxyribodipyrimidine photolyase activity

namespace: molecular_function

def: is a DNA repair enzyme. It binds to UV-damaged DNA containing pyrimidine dimers and, upon absorbing a near-UV photon (300 to 500 nm), breaks the cyclobutane ring joining the two pyrimidines of the dimer.

part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

PMID : 2668276, 2110564, 2282137, 9360600,

E.C. 4.1.99.3

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GO:XXXXXX92 : Coenzyme F420-dependent sulfite reductase activity

namespace: molecular_function

def: A biochemical reaction involving coenzyme F420 in the conversion of sulfite to sulfide.

part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

PMID : 16048999, 16048999

E.C. 1.---

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GO:XXXXXX93 : Coenzyme F420H2-oxidase activity

namespace: molecular_function

def: A biochemical reaction which converts a reduced form of coenzyme F420 (F420H2) to F420 in the presence of molecular oxygen.

part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

E.C. 1.---

PMID : 15340796, 17480207

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GO:XXXXXX94 : Coenzyme F420-dependent heterodisulfide oxidoreductase activity

namespace: molecular_function

def: A biochemical reaction involving a reduced form of coenzyme F420 (F420H2) in the reduction the heterodisulfide bond of 2-mercaptoethanesulfonate and 7-mercaptoheptanoylthreonine phosphate.

part_of: GO:XXXXXX82 : Coenzyme F420-dependent metabolic process

PMID : 9914308, 11607121

E.C.

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