Mock-ups of new GOC Annotation pages (Deprecated): Difference between revisions

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These pages are drafts of new GO Annotation pages for the GO Consortium website, that will eventually replace and improve upon the information provided by current documentation pages:
#REDIRECT [[Deprecated]]


* [http://www.geneontology.org/GO.annotation.shtml Annotation Guide] CONTENT MOVED TO: [[Introduction to the GO Consortium annotation set]]
[[Category: Deprecated]]
 
* [http://www.geneontology.org/GO.evidence.shtml Evidence Codes] Include Flow Chart? Need to include new PAINT evidence types. State objective of concordance with ECO?
 
* [http://www.geneontology.org/GO.annotation.conventions.shtml Conventions] CONTENT MOVED TO: [[Qualifiers]],[[Database Objects]], [[References]]
 
* [http://www.geneontology.org/GO.annotation.SOP.shtml SOPs] CONTENT MOVED TO: [[Guidelines for literature-based curation]], [[Guidelines for electronic annotation methods]], [[Guidelines for manual, sequence based curation]], [[How External Communities can contribute annotations to the GO Consortium]]
 
* [http://www.geneontology.org/GO.annotation.species_db.shtml Species, Databases]
 
* [http://www.geneontology.org/GO.annotation_qc.shtml QC Checks]. Perhaps the Annotation Quality Control section of: [http://www.geneontology.org/GO.format.annotation.shtml| File Format] could be displayed in this page
 
* [http://www.geneontology.org/GO.format.annotation.shtml File Format]
 
* [http://www.geneontology.org/cgi-bin/references.cgi GO Reference Collection] As this lists GO_REFs, which are just one of the references allowed in the GO annotation format, perhaps this could be linked to from a new [[References]] page?
 
 
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'''New Annotation Documentation Layout'''
 
Perhaps we could have an introduction to a generic GO annotation, with tabs displaying documentation for each of the fields; including:
 
--[[Database Objects]]
 
-- [[Qualifiers]]
 
-- [[References]]
 
-- [http://www.geneontology.org/GO.evidence.shtml Evidence Codes]
 
[[Introduction to the GO Consortium annotation set]]
 
[[How External Communities can contribute annotations to the GO Consortium]]
 
[[Annotation Guidelines]]
 
-- [[Guidelines for literature-based curation]]
 
-- [[Guidelines for electronic annotation methods]]
 
-- [[Guidelines for manual, sequence based curation]]
 
[[GO Annotation Usage Guidelines]]
 
 
 
I realize that its not a page for the annotation group, however should one be created with deals with requesting new GO terms? Suggestions for content here: [[Requesting new GO terms]]
 
The Annotation Quality Control section of: http://www.geneontology.org/GO.format.annotation.shtml could be displayed as a separate page, and include a link to the Annotation QC page that Amelia has now generated - http://www.geneontology.org/GO.annotation_qc.shtml

Latest revision as of 08:17, 27 September 2021

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