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| #REDIRECT [[Defunct]] | | #REDIRECT [[Deprecated]] |
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| [[Category:Annotation]] | | [[Category: Deprecated]] |
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| This page lists the content of the website overhaul done in 2011. Note that most links are dead.
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| Drafts of new GO Annotation pages are being prepared for the GO Consortium website. These will eventually replace and improve upon the information provided by current documentation pages listed below:
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| * [http://www.geneontology.org/GO.annotation.shtml Annotation Guide] CONTENT MOVED TO: [[Introduction to the GO Consortium annotation set]]
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| * [http://www.geneontology.org/GO.evidence.shtml Evidence Codes] Include Flow Chart? Need to include new PAINT evidence types. State objective of concordance with ECO?
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| * [http://www.geneontology.org/GO.annotation.conventions.shtml Conventions] CONTENT MOVED TO: [[Qualifiers]],[[Database Objects]], [[References]]
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| * [http://www.geneontology.org/GO.annotation.SOP.shtml SOPs] CONTENT MOVED TO: [[Guidelines for literature-based curation]], [[Guidelines for electronic annotation methods]], [[Guidelines for manual, sequence based curation]], [[How External Communities can contribute annotations to the GO Consortium]]
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| * [http://www.geneontology.org/GO.annotation.species_db.shtml Species, Databases]
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| * [http://www.geneontology.org/GO.annotation_qc.shtml QC Checks]. Perhaps the Annotation Quality Control section of: [http://www.geneontology.org/GO.format.annotation.shtml| File Format] could be displayed in this page
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| * [http://www.geneontology.org/GO.format.annotation.shtml File Format]
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| * [http://www.geneontology.org/cgi-bin/references.cgi GO Reference Collection] As this lists GO_REFs, which are just one of the references allowed in the GO annotation format, perhaps this could be linked to from a new [[References]] page?
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| ----
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| '''New Annotation Documentation Layout'''
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| Perhaps we could have an introduction to a generic GO annotation, with tabs displaying documentation for each of the fields; including:
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| --[[Database Objects]]
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| -- [[Qualifiers]]
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| -- [[References]]
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| -- [http://www.geneontology.org/GO.evidence.shtml Evidence Codes]
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| -- [[With field]]
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| --[[Annotation assigned_by]]
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| --[[Annotation Extension]]
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| [[Introduction to the GO Consortium annotation set]]
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| [[How External Communities can contribute annotations to the GO Consortium]]
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| [[Annotation Guidelines]]
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| -- [[Guidelines for literature-based curation]]
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| -- [[Guidelines for electronic annotation methods]]
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| -- [[Guidelines for manual, sequence based curation]]
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| [[GO Annotation Usage Guidelines]]
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| I realize that its not a page for the annotation group, however should one be created that deals with how to requesting new GO terms? Suggestions for content here: [[Requesting new GO terms]]
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| The Annotation Quality Control section of: http://www.geneontology.org/GO.format.annotation.shtml could be displayed as a separate page, and include a link to the Annotation QC page that Amelia has now generated - http://www.geneontology.org/GO.annotation_qc.shtml
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| ----
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| [[GO annotation fields required for correct display]]
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| [[Technical Priorities for Annotation Groups]]
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