OBO-Edit: Help document OBO-Edit 2: Difference between revisions

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Thank you for your willingness to help get the OBO-Edit 2 user documentation up to date so that we can publicly release OBO-Edit 2!  Please add your name to the section or sections you wish to contribute text for.  Feel free to add new sections as well--this is definitely not a complete list.
[[Category:OBO-Edit]]
(Updated 19 Aug 2008)
(Updated 13 March 2009)


* Drag and drop layout customization
These are the help pages that still need to be updated (or, in some cases, written):
* Creating new layouts (and other general layout management)
 
* The new search system
*The_OBO_Adapter.htm - has dead link to root picking, which is no longer part of the filtering documentation
* The new rendering system (particularly the html expression syntax)
* The OBO OWL Adapter (empty page; not yet linked from index)
* Image plugin
* The OWL URL Reader (empty page; not yet linked from index)
* Reasoner, xps: Chris M.
* The GO Association File Adapter (empty page; not yet linked from index)
* Graph Viewer - review to confirm accuracy, especially the bit on "succinct" (or whatever we end up calling it)
* Graph_Editor.htm ? (or has this been done since Aug '08? -mah)
* Importing_Terms.htm (empty page; not yet linked from index)
* The_ID_Fixer.htm (empty page; not yet linked from index)
* All of the Reasoner pages (maybe some are ok as-is, but they all need to be looked at)
* Semantic_Parser_Manager.htm (empty page)
* Cross_Product_Matrix_Editor.htm (nearly empty page)
* Expressions pages  (may be ok as-is, but they all need to be looked at)
* The Command Line pages  (may be ok as-is, but they all need to be looked at)
 
Additions March 16-18, 2009
 
* Loading_a_History_File.htm - check for accuracy, especially in light of [https://sourceforge.net/tracker/index.php?func=detail&aid=2526247&group_id=36855&atid=418257| SF 2526247] bug report
* The_Reasoner_and_the_Interface.htm seems to need some updating, at least to add the RuleBasedReasoner, add a link to the Reasoner Manager help page, and maybe decrease redundancy with the reasoner manager page (also, the note in parentheses at the beginning seems out of place)
* The_Reasoner_Manager needs updating - add experimental RuleBasedReasoner
* Reasoner_Prefilters needs updating - still mentions the old "flower button"
* I've done a modest update on Cross_Products_in_the_Text_Editor.htm, and the intro to xps is pretty general and therefore probably OK. But these cross-product pages need attention (if we're keeping the features they refer to ...), even if just to confirm that they're OK:
** Cross_Product_Matrix_Editor.htm (also noted in old list above)
** Cross_Product_Info.htm
** Intersection_Editor.htm
* Plugins.htm - a programmer should check over this one
* I think the command line pages are probably OK, but it won't hurt for one or two others to take a look.
 
(midori)
== Some references that might be useful: ==
 
* [http://www.oboedit.org/docs/ User Guide for OBO-Edit 1]
* [[OBO-Edit_2.000_Testing_Tasks]] outlines much of the GUI functionality of OE2
* The [[OBO-Edit 2.0 beta release notes]] mention some of the differences between OE1 and 2.
* The [http://sourceforge.net/mailarchive/forum.php?forum_name=geneontology-oboedit-working-group OBO-Edit Working Group] mailing list archives may also be useful, particularly the WG weekly [[Web_chat_transcripts|chat transcripts]]
* Browse the SourceForge SVN [http://geneontology.svn.sourceforge.net/viewvc/geneontology/java/ code repository] (which includes the oboedit code and also the code for the bbop and obo libraries that oboedit uses)


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Return to [[OBO-Edit: Documenting OBO-Edit 2]] main page

Latest revision as of 15:28, 30 June 2014

(Updated 19 Aug 2008) (Updated 13 March 2009)

These are the help pages that still need to be updated (or, in some cases, written):

  • The_OBO_Adapter.htm - has dead link to root picking, which is no longer part of the filtering documentation
  • The OBO OWL Adapter (empty page; not yet linked from index)
  • The OWL URL Reader (empty page; not yet linked from index)
  • The GO Association File Adapter (empty page; not yet linked from index)
  • Graph Viewer - review to confirm accuracy, especially the bit on "succinct" (or whatever we end up calling it)
  • Graph_Editor.htm ? (or has this been done since Aug '08? -mah)
  • Importing_Terms.htm (empty page; not yet linked from index)
  • The_ID_Fixer.htm (empty page; not yet linked from index)
  • All of the Reasoner pages (maybe some are ok as-is, but they all need to be looked at)
  • Semantic_Parser_Manager.htm (empty page)
  • Cross_Product_Matrix_Editor.htm (nearly empty page)
  • Expressions pages (may be ok as-is, but they all need to be looked at)
  • The Command Line pages (may be ok as-is, but they all need to be looked at)

Additions March 16-18, 2009

  • Loading_a_History_File.htm - check for accuracy, especially in light of SF 2526247 bug report
  • The_Reasoner_and_the_Interface.htm seems to need some updating, at least to add the RuleBasedReasoner, add a link to the Reasoner Manager help page, and maybe decrease redundancy with the reasoner manager page (also, the note in parentheses at the beginning seems out of place)
  • The_Reasoner_Manager needs updating - add experimental RuleBasedReasoner
  • Reasoner_Prefilters needs updating - still mentions the old "flower button"
  • I've done a modest update on Cross_Products_in_the_Text_Editor.htm, and the intro to xps is pretty general and therefore probably OK. But these cross-product pages need attention (if we're keeping the features they refer to ...), even if just to confirm that they're OK:
    • Cross_Product_Matrix_Editor.htm (also noted in old list above)
    • Cross_Product_Info.htm
    • Intersection_Editor.htm
  • Plugins.htm - a programmer should check over this one
  • I think the command line pages are probably OK, but it won't hurt for one or two others to take a look.

(midori)

Some references that might be useful:


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