OBO-Edit: Help document OBO-Edit 2: Difference between revisions
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[[Category:OBO-Edit]] | |||
(Updated 19 Aug 2008) | |||
(Updated 13 March 2009) | |||
These are the help pages that still need to be updated (or, in some cases, written): | |||
* | *The_OBO_Adapter.htm - has dead link to root picking, which is no longer part of the filtering documentation | ||
* | * The OBO OWL Adapter (empty page; not yet linked from index) | ||
* The | * The OWL URL Reader (empty page; not yet linked from index) | ||
* The | * The GO Association File Adapter (empty page; not yet linked from index) | ||
* Reasoner, | * Graph Viewer - review to confirm accuracy, especially the bit on "succinct" (or whatever we end up calling it) | ||
* | * Graph_Editor.htm ? (or has this been done since Aug '08? -mah) | ||
* | * Importing_Terms.htm (empty page; not yet linked from index) | ||
* | * The_ID_Fixer.htm (empty page; not yet linked from index) | ||
* | * All of the Reasoner pages (maybe some are ok as-is, but they all need to be looked at) | ||
* | * Semantic_Parser_Manager.htm (empty page) | ||
* | * Cross_Product_Matrix_Editor.htm (nearly empty page) | ||
* Expressions pages (may be ok as-is, but they all need to be looked at) | |||
* The Command Line pages (may be ok as-is, but they all need to be looked at) | |||
Additions March 16-18, 2009 | |||
* Loading_a_History_File.htm - check for accuracy, especially in light of [https://sourceforge.net/tracker/index.php?func=detail&aid=2526247&group_id=36855&atid=418257| SF 2526247] bug report | |||
* The_Reasoner_and_the_Interface.htm seems to need some updating, at least to add the RuleBasedReasoner, add a link to the Reasoner Manager help page, and maybe decrease redundancy with the reasoner manager page (also, the note in parentheses at the beginning seems out of place) | |||
* The_Reasoner_Manager needs updating - add experimental RuleBasedReasoner | |||
* Reasoner_Prefilters needs updating - still mentions the old "flower button" | |||
* I've done a modest update on Cross_Products_in_the_Text_Editor.htm, and the intro to xps is pretty general and therefore probably OK. But these cross-product pages need attention (if we're keeping the features they refer to ...), even if just to confirm that they're OK: | |||
** Cross_Product_Matrix_Editor.htm (also noted in old list above) | |||
** Cross_Product_Info.htm | |||
** Intersection_Editor.htm | |||
* Plugins.htm - a programmer should check over this one | |||
* I think the command line pages are probably OK, but it won't hurt for one or two others to take a look. | |||
Some references that might be useful: | (midori) | ||
== Some references that might be useful: == | |||
* [http://www.oboedit.org/docs/ User Guide for OBO-Edit 1] | * [http://www.oboedit.org/docs/ User Guide for OBO-Edit 1] | ||
* [[OBO-Edit_2.000_Testing_Tasks]] outlines much of the GUI functionality of OE2 | * [[OBO-Edit_2.000_Testing_Tasks]] outlines much of the GUI functionality of OE2 | ||
* The [[OBO-Edit 2.0 beta release notes]] mention some of the differences between OE1 and 2. | * The [[OBO-Edit 2.0 beta release notes]] mention some of the differences between OE1 and 2. | ||
* The [http://sourceforge.net/mailarchive/forum.php?forum_name=geneontology-oboedit-working-group OBO-Edit Working Group] mailing list archives may also be useful, particularly the WG weekly chat transcripts | * The [http://sourceforge.net/mailarchive/forum.php?forum_name=geneontology-oboedit-working-group OBO-Edit Working Group] mailing list archives may also be useful, particularly the WG weekly [[Web_chat_transcripts|chat transcripts]] | ||
* Browse the SourceForge SVN [http://geneontology.svn.sourceforge.net/viewvc/geneontology/java/ code repository] (which includes the oboedit code and also the code for the bbop and obo libraries that oboedit uses) | * Browse the SourceForge SVN [http://geneontology.svn.sourceforge.net/viewvc/geneontology/java/ code repository] (which includes the oboedit code and also the code for the bbop and obo libraries that oboedit uses) | ||
----- | ----- | ||
Return to [[OBO-Edit]] main page | Return to [[OBO-Edit]] main page |
Latest revision as of 15:28, 30 June 2014
(Updated 19 Aug 2008) (Updated 13 March 2009)
These are the help pages that still need to be updated (or, in some cases, written):
- The_OBO_Adapter.htm - has dead link to root picking, which is no longer part of the filtering documentation
- The OBO OWL Adapter (empty page; not yet linked from index)
- The OWL URL Reader (empty page; not yet linked from index)
- The GO Association File Adapter (empty page; not yet linked from index)
- Graph Viewer - review to confirm accuracy, especially the bit on "succinct" (or whatever we end up calling it)
- Graph_Editor.htm ? (or has this been done since Aug '08? -mah)
- Importing_Terms.htm (empty page; not yet linked from index)
- The_ID_Fixer.htm (empty page; not yet linked from index)
- All of the Reasoner pages (maybe some are ok as-is, but they all need to be looked at)
- Semantic_Parser_Manager.htm (empty page)
- Cross_Product_Matrix_Editor.htm (nearly empty page)
- Expressions pages (may be ok as-is, but they all need to be looked at)
- The Command Line pages (may be ok as-is, but they all need to be looked at)
Additions March 16-18, 2009
- Loading_a_History_File.htm - check for accuracy, especially in light of SF 2526247 bug report
- The_Reasoner_and_the_Interface.htm seems to need some updating, at least to add the RuleBasedReasoner, add a link to the Reasoner Manager help page, and maybe decrease redundancy with the reasoner manager page (also, the note in parentheses at the beginning seems out of place)
- The_Reasoner_Manager needs updating - add experimental RuleBasedReasoner
- Reasoner_Prefilters needs updating - still mentions the old "flower button"
- I've done a modest update on Cross_Products_in_the_Text_Editor.htm, and the intro to xps is pretty general and therefore probably OK. But these cross-product pages need attention (if we're keeping the features they refer to ...), even if just to confirm that they're OK:
- Cross_Product_Matrix_Editor.htm (also noted in old list above)
- Cross_Product_Info.htm
- Intersection_Editor.htm
- Plugins.htm - a programmer should check over this one
- I think the command line pages are probably OK, but it won't hurt for one or two others to take a look.
(midori)
Some references that might be useful:
- User Guide for OBO-Edit 1
- OBO-Edit_2.000_Testing_Tasks outlines much of the GUI functionality of OE2
- The OBO-Edit 2.0 beta release notes mention some of the differences between OE1 and 2.
- The OBO-Edit Working Group mailing list archives may also be useful, particularly the WG weekly chat transcripts
- Browse the SourceForge SVN code repository (which includes the oboedit code and also the code for the bbop and obo libraries that oboedit uses)
Return to OBO-Edit main page