OEWG 20090512: Difference between revisions
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[[Category:OBO-Edit working group]] | |||
OBO-Edit Working Group, Tuesday May 12th, 2009 9.30 a.m. PST <br> | OBO-Edit Working Group, Tuesday May 12th, 2009 9.30 a.m. PST <br> | ||
Line 8: | Line 9: | ||
Agenda/Chair: Midori <br> | Agenda/Chair: Midori <br> | ||
Minutes: | Minutes: DavidOS<br> | ||
Attendees: | Attendees: Harold, DavidOS, KarenC, Midori, Jen, Chris, Amina | ||
==Action items carried over== | ==Action items carried over== | ||
* Graph Editor Crashes <br> | * Graph Editor Crashes - Pending<br> | ||
** https://sourceforge.net/tracker/?func=detail&aid=2747794&group_id=36855&atid=418257 <br> | ** https://sourceforge.net/tracker/?func=detail&aid=2747794&group_id=36855&atid=418257 <br> | ||
** warning before GE crashes or look into making Graph Editor quit instead of crashing the application | ** warning before GE crashes or look into making Graph Editor quit instead of crashing the application | ||
* UTF8 support | * UTF8 support | ||
* Ability to switch between incremental reasoning on/off states. | * Ability to switch between incremental reasoning on/off states. - In Progress | ||
* Image display improvements | * Image display improvements | ||
== Teaching Resources == | == Teaching Resources == | ||
* | * David's poster posted to the wiki: | ||
http://wiki.geneontology.org/index.php/OBO-Edit:_References/Teaching_Resources#Posters | |||
* Link oboedit.org/SF download page from the main GO documentation | |||
** Midori - No fixed - points to oboedit.org download page so as to have less overhead to update GO documentation page every time a new release package is out. | |||
==Discussion items== | ==Discussion items== | ||
* Lost log files in latest version OE2 | |||
** Midori and Harold can't see log files for new version OE2. David checked this - his not being updated either. | |||
** Jen, could this be connected with there being 2 different config folders? | |||
*** But - other people don't have this issue, so probably not. | |||
** Amina will try to look into issue this week. | |||
* Some filters give wrong answers unless reasoner turned on | |||
** https://sourceforge.net/tracker/?func=detail&aid=1899612&group_id=36855&atid=418257 | |||
** This is causing confusion among new users (curators at FlyBase) | |||
** David: Ideal behavior - block these searches if reasoner not on + give warning that reasoner must be turned on for them to work. | |||
** Amina will look in to fixing this week | |||
* Feature request - Check/auto-update for when alt_id turns up in a consider or replaced_by tag. | |||
** Should we update automatically? Or perhaps have a verification check? | |||
*** General agreement that it should be automatic - having a check being excessive paranoia. | |||
* Amina met Tanya at Stanford last Thursday. | |||
** Feature request arising from meeting with Tanya - set DBxref manager so can add DBxrefs to synonyms. | |||
*** David: Would be v.useful to have this feature. | |||
*** Jen and Harold: might make it easiest if we could do this all be dragging an dropping. | |||
*** But Midori doesn't want to be forced to drag and drop. | |||
** DBxref manager is working to add refs to multiple selected terms but this is very slow. Jen looking in to speeding this up. | |||
:addendum: there is a feature request open for the dbxref library/synonym thing: | |||
https://sourceforge.net/tracker/?func=detail&aid=2355651&group_id=36855&atid=418260 | |||
* Jen demo - merge GUI. | |||
** Looks good, and although there are some confusing looking options, these seem to be explained well in the | |||
existing doc. | |||
* Amina - suggestion for future meetings. Can others in the group contribute tips for a 'tip of the week' each meeting? | |||
==Demos/ Tips/ Ticks== | |||
=== Tip of the week === | |||
* Adding multiple terms at one go and what to expect from this feature in the future! - Amina | |||
==Action Items== | ==Action Items== |
Latest revision as of 16:47, 30 June 2014
OBO-Edit Working Group, Tuesday May 12th, 2009 9.30 a.m. PST
Conference call details:
US: 1-888-727-6732
Outside US: 1-719-867-3417
pin: 601425
Agenda/Chair: Midori
Minutes: DavidOS
Attendees: Harold, DavidOS, KarenC, Midori, Jen, Chris, Amina
Action items carried over
- Graph Editor Crashes - Pending
- https://sourceforge.net/tracker/?func=detail&aid=2747794&group_id=36855&atid=418257
- warning before GE crashes or look into making Graph Editor quit instead of crashing the application
- https://sourceforge.net/tracker/?func=detail&aid=2747794&group_id=36855&atid=418257
- UTF8 support
- Ability to switch between incremental reasoning on/off states. - In Progress
- Image display improvements
Teaching Resources
- David's poster posted to the wiki:
http://wiki.geneontology.org/index.php/OBO-Edit:_References/Teaching_Resources#Posters
- Link oboedit.org/SF download page from the main GO documentation
- Midori - No fixed - points to oboedit.org download page so as to have less overhead to update GO documentation page every time a new release package is out.
Discussion items
- Lost log files in latest version OE2
- Midori and Harold can't see log files for new version OE2. David checked this - his not being updated either.
- Jen, could this be connected with there being 2 different config folders?
- But - other people don't have this issue, so probably not.
- Amina will try to look into issue this week.
- Some filters give wrong answers unless reasoner turned on
- https://sourceforge.net/tracker/?func=detail&aid=1899612&group_id=36855&atid=418257
- This is causing confusion among new users (curators at FlyBase)
- David: Ideal behavior - block these searches if reasoner not on + give warning that reasoner must be turned on for them to work.
- Amina will look in to fixing this week
- Feature request - Check/auto-update for when alt_id turns up in a consider or replaced_by tag.
- Should we update automatically? Or perhaps have a verification check?
- General agreement that it should be automatic - having a check being excessive paranoia.
- Should we update automatically? Or perhaps have a verification check?
- Amina met Tanya at Stanford last Thursday.
- Feature request arising from meeting with Tanya - set DBxref manager so can add DBxrefs to synonyms.
- David: Would be v.useful to have this feature.
- Jen and Harold: might make it easiest if we could do this all be dragging an dropping.
- But Midori doesn't want to be forced to drag and drop.
- DBxref manager is working to add refs to multiple selected terms but this is very slow. Jen looking in to speeding this up.
- Feature request arising from meeting with Tanya - set DBxref manager so can add DBxrefs to synonyms.
- addendum: there is a feature request open for the dbxref library/synonym thing:
https://sourceforge.net/tracker/?func=detail&aid=2355651&group_id=36855&atid=418260
- Jen demo - merge GUI.
- Looks good, and although there are some confusing looking options, these seem to be explained well in the
existing doc.
- Amina - suggestion for future meetings. Can others in the group contribute tips for a 'tip of the week' each meeting?
Demos/ Tips/ Ticks
Tip of the week
- Adding multiple terms at one go and what to expect from this feature in the future! - Amina