OEWG 20090512: Difference between revisions

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[[Category:OBO-Edit working group]]
OBO-Edit Working Group, Tuesday May 12th, 2009 9.30 a.m. PST <br>
OBO-Edit Working Group, Tuesday May 12th, 2009 9.30 a.m. PST <br>


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Agenda/Chair: Midori <br>
Agenda/Chair: Midori <br>
Minutes: Melissa<br>
Minutes: DavidOS<br>
Attendees:
Attendees: Harold, DavidOS, KarenC, Midori, Jen, Chris, Amina


==Action items carried over==
==Action items carried over==


* Graph Editor Crashes <br>
* Graph Editor Crashes - Pending<br>
** https://sourceforge.net/tracker/?func=detail&aid=2747794&group_id=36855&atid=418257 <br>
** https://sourceforge.net/tracker/?func=detail&aid=2747794&group_id=36855&atid=418257 <br>
** warning before GE crashes or look into making Graph Editor quit instead of crashing the application
** warning before GE crashes or look into making Graph Editor quit instead of crashing the application


* UTF8 support
* UTF8 support  


* Ability to switch between incremental reasoning on/off states.
* Ability to switch between incremental reasoning on/off states. - In Progress


* Image display improvements
* Image display improvements


== Teaching Resources ==
== Teaching Resources ==
* page up on oboedit.org? Davids paper posted?
* David's poster posted to the wiki:
* check in oboedit.org in to SVN
http://wiki.geneontology.org/index.php/OBO-Edit:_References/Teaching_Resources#Posters
* Link oboedit.org from the main GO documentation


* Link oboedit.org/SF download page from the main GO documentation
** Midori - No fixed - points to oboedit.org download page so as to have less overhead to update GO documentation page every time a new release package is out.


==Discussion items==
==Discussion items==
* Some filters give wrong answers unless reasoner turned on <br>
https://sourceforge.net/tracker/?func=detail&aid=1899612&group_id=36855&atid=418257 <br>


* Lost log files in latest version OE2
** Midori and Harold can't see log files for new version OE2. David checked this - his not being updated either.
** Jen, could this be connected with there being 2 different config folders?
*** But - other people don't have this issue, so probably not.
** Amina will try to look into issue this week.
* Some filters give wrong answers unless reasoner turned on
** https://sourceforge.net/tracker/?func=detail&aid=1899612&group_id=36855&atid=418257
** This is causing confusion among new users (curators at FlyBase)
** David: Ideal behavior - block these searches if reasoner not on + give warning that reasoner must be turned on for them to work.
** Amina will look in to fixing this week
* Feature request - Check/auto-update for when alt_id turns up in a consider or replaced_by tag.
** Should we update automatically? Or perhaps have a verification check?
*** General agreement that it should be automatic - having a check being excessive paranoia.
* Amina met Tanya at Stanford last Thursday.
** Feature request arising from meeting with Tanya - set DBxref manager so can add DBxrefs to synonyms. 
*** David: Would be v.useful to have this feature.
*** Jen and Harold: might make it easiest if we could do this all be dragging an dropping.
*** But Midori doesn't want to be forced to drag and drop.
** DBxref manager is working to add refs to multiple selected terms but this is very slow. Jen looking in to speeding this up.
:addendum: there is a feature request open for the dbxref library/synonym thing:
https://sourceforge.net/tracker/?func=detail&aid=2355651&group_id=36855&atid=418260
* Jen demo - merge GUI.
** Looks good, and although there are some confusing looking options, these seem to be explained well in the
existing doc.
* Amina - suggestion for future meetings.  Can others in the group contribute tips for a 'tip of the week' each meeting?


==Demos/ Tips/ Ticks==
=== Tip of the week ===


* Adding multiple terms at one go and what to expect from this feature in the future! - Amina


==Action Items==
==Action Items==

Latest revision as of 16:47, 30 June 2014

OBO-Edit Working Group, Tuesday May 12th, 2009 9.30 a.m. PST

Conference call details:
US: 1-888-727-6732
Outside US: 1-719-867-3417
pin: 601425


Agenda/Chair: Midori
Minutes: DavidOS
Attendees: Harold, DavidOS, KarenC, Midori, Jen, Chris, Amina

Action items carried over

  • UTF8 support
  • Ability to switch between incremental reasoning on/off states. - In Progress
  • Image display improvements

Teaching Resources

  • David's poster posted to the wiki:

http://wiki.geneontology.org/index.php/OBO-Edit:_References/Teaching_Resources#Posters


  • Link oboedit.org/SF download page from the main GO documentation
    • Midori - No fixed - points to oboedit.org download page so as to have less overhead to update GO documentation page every time a new release package is out.

Discussion items

  • Lost log files in latest version OE2
    • Midori and Harold can't see log files for new version OE2. David checked this - his not being updated either.
    • Jen, could this be connected with there being 2 different config folders?
      • But - other people don't have this issue, so probably not.
    • Amina will try to look into issue this week.



  • Feature request - Check/auto-update for when alt_id turns up in a consider or replaced_by tag.
    • Should we update automatically? Or perhaps have a verification check?
      • General agreement that it should be automatic - having a check being excessive paranoia.


  • Amina met Tanya at Stanford last Thursday.
    • Feature request arising from meeting with Tanya - set DBxref manager so can add DBxrefs to synonyms.
      • David: Would be v.useful to have this feature.
      • Jen and Harold: might make it easiest if we could do this all be dragging an dropping.
      • But Midori doesn't want to be forced to drag and drop.
    • DBxref manager is working to add refs to multiple selected terms but this is very slow. Jen looking in to speeding this up.
addendum: there is a feature request open for the dbxref library/synonym thing:

https://sourceforge.net/tracker/?func=detail&aid=2355651&group_id=36855&atid=418260

  • Jen demo - merge GUI.
    • Looks good, and although there are some confusing looking options, these seem to be explained well in the

existing doc.


  • Amina - suggestion for future meetings. Can others in the group contribute tips for a 'tip of the week' each meeting?

Demos/ Tips/ Ticks

Tip of the week

  • Adding multiple terms at one go and what to expect from this feature in the future! - Amina

Action Items

Links

Back to OEWG Meeting agenda and minutes List