OEWG 20090625: Difference between revisions
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** DS: But aren't they visible already? I have non-trans relations in fly anatomy and they are visible in OTE. | ** DS: But aren't they visible already? I have non-trans relations in fly anatomy and they are visible in OTE. | ||
** Chris: Think the problem is only seen if you have a term that only has non-transitive link(s) to parents. | ** Chris: Think the problem is only seen if you have a term that only has non-transitive link(s) to parents. | ||
* Amina: Items discussed during the webex session with Taniya and DavidH on wednesday morning. | * Amina: Items discussed during the webex session with Taniya and DavidH on wednesday morning. | ||
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*** Possible problem with assignement of wrong namespace during editing. OE2 is meant to automatically assign new terms namespace of their parent. David H thinks this sometimes fails. | *** Possible problem with assignement of wrong namespace during editing. OE2 is meant to automatically assign new terms namespace of their parent. David H thinks this sometimes fails. | ||
**** Feature request: Optional Verification check to check if is_a child has same namespace as parent. | **** Feature request: Optional Verification check to check if is_a child has same namespace as parent. | ||
** Discussion of how this related to disjunction GO root nodes | |||
*** AI: Check if it now possible to make root terms disjoint without screwing up display in OTE? | |||
** Tanya feature request: NSBP check (MFBP check???) [DOS: not clear to me what this refers to - perhaps someone can fill in the details?] | ** Tanya feature request: NSBP check (MFBP check???) [DOS: not clear to me what this refers to - perhaps someone can fill in the details?] | ||
*** Updates to user dictionary still broken | *** Updates to user dictionary still broken | ||
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**** Jen reports additional (perhaps windows specific?) problem of verification manager failing to read any dictionaries from her config folder. | **** Jen reports additional (perhaps windows specific?) problem of verification manager failing to read any dictionaries from her config folder. | ||
* Update to Java version 6/1.6 from version 5/1.5. Amina to demo/walk all users through this, if required. | * Update to Java version 6/1.6 from version 5/1.5. Amina to demo/walk all users through this, if required. | ||
** For mac users - open java preferences and drag Java 6 to top of list (note If you have the latest mac system update, java6 (AKA 1.6) should be installed. This is easy to reverse if causes problems for other software. | ** For mac users - open java preferences and drag Java 6 to top of list (note If you have the latest mac system update, java6 (AKA 1.6) should be installed. This is easy to reverse if causes problems for other software. | ||
* Last discussion item - tentative meeting schedule | * Last discussion item - tentative meeting schedule | ||
** http://wiki.geneontology.org/index.php/OBO-Edit_Working_Group_weekly_meeting_minutes/agenda_rota | ** http://wiki.geneontology.org/index.php/OBO-Edit_Working_Group_weekly_meeting_minutes/agenda_rota | ||
** Doodle poll results: http://www.doodle.com/6tdzhy9av57yf98b <br> | ** Doodle poll results: http://www.doodle.com/6tdzhy9av57yf98b <br> | ||
* Harold:Perhaps alternating with a bi-weekly schedule? | * Harold:Perhaps alternating with a bi-weekly schedule? | ||
* Chris prefers alternating on a weekly basis. | * Chris prefers alternating on a weekly basis. | ||
* Amina & Chris - We need to be able to fit Jane into at least some | * Amina & Chris - We need to be able to fit Jane into at least some meeting. She has a lot of bugs she wants fixing | ||
meeting. She has a lot of bugs she wants fixing | |||
* Decision: Next week meet Thursday again and then decide. | * Decision: Next week meet Thursday again and then decide. | ||
* Demo by Jen: Tag filtering. | * Demo by Jen: Tag filtering. | ||
* Midori: Please could you remove id from the list of choice? | |||
*** General agreement to this. | |||
** Feature request: save implied links [for presentation/save all] is confusing - can we get rid of the dialogue box altogether and have the 'for presentation' behavior be the default. | |||
*** Seems to be general aggreement with this suggestions | |||
*** AI: Amina - find out what does realize implied links do? If we don't need it delete | |||
* Harold's interface issues | |||
** 1. Can we make the icons at the top of the windows be larger? Some people find them way too small. | |||
*** Amina - trade off - could cause problems for screen real estate | |||
*** Jen - Perhaps we should make it configurable | |||
*** General agreement to configurable option for this? | |||
** Can we have change the windowing setup so that detached windows don't always stay on top? | |||
* Discussion of graph viewing and graph editor: | |||
needs to investigate further to write bug report. | |||
** Jen has had problems showing all ancestors to root with graph editor- needs to investigate further to write bug report. | |||
** Graph viewer - still buggy. Doesn't work with RBR, needs LBL to display complete path to root. | |||
==Action Items== | ==Action Items== |
Revision as of 09:06, 26 June 2009
OBO-Edit Working Group Meeting, Thursday June 25th, 2009 8.30 a.m. PST
Conference call details:
US: 1-888-727-6732
Outside US: 1-719-867-3417
pin: 601425
Agenda/Chair: Midori
Minutes: DavidOS
Attendees:
Action items carried over
Minutes
Present: Amina, Chris, Harold, Melissa, Jen, Midori, David OS [Hope I didn't miss anyone!]
- Update from Amina about what she's working on:
- 1. Fixing assert implied links
- 2. Ability to switch of incremental reasoning.
- Think this is now working, but need to get Chris to check that the fix is safe.
- 3. Making make viewing transitive relations configurable in the tree editor as they are now filtered out.
- DS: But aren't they visible already? I have non-trans relations in fly anatomy and they are visible in OTE.
- Chris: Think the problem is only seen if you have a term that only has non-transitive link(s) to parents.
- Amina: Items discussed during the webex session with Taniya and DavidH on wednesday morning.
- Apparently lots of complaints - including:
- Possible problem with assignement of wrong namespace during editing. OE2 is meant to automatically assign new terms namespace of their parent. David H thinks this sometimes fails.
- Feature request: Optional Verification check to check if is_a child has same namespace as parent.
- Possible problem with assignement of wrong namespace during editing. OE2 is meant to automatically assign new terms namespace of their parent. David H thinks this sometimes fails.
- Discussion of how this related to disjunction GO root nodes
- AI: Check if it now possible to make root terms disjoint without screwing up display in OTE?
- Tanya feature request: NSBP check (MFBP check???) [DOS: not clear to me what this refers to - perhaps someone can fill in the details?]
- Updates to user dictionary still broken
- Amina thinks this is fixed in 2.1
- Jen reports additional (perhaps windows specific?) problem of verification manager failing to read any dictionaries from her config folder.
- Updates to user dictionary still broken
- Apparently lots of complaints - including:
- Update to Java version 6/1.6 from version 5/1.5. Amina to demo/walk all users through this, if required.
- For mac users - open java preferences and drag Java 6 to top of list (note If you have the latest mac system update, java6 (AKA 1.6) should be installed. This is easy to reverse if causes problems for other software.
- Last discussion item - tentative meeting schedule
- Harold:Perhaps alternating with a bi-weekly schedule?
- Chris prefers alternating on a weekly basis.
- Amina & Chris - We need to be able to fit Jane into at least some meeting. She has a lot of bugs she wants fixing
- Decision: Next week meet Thursday again and then decide.
- Demo by Jen: Tag filtering.
- Midori: Please could you remove id from the list of choice?
- General agreement to this.
- Feature request: save implied links [for presentation/save all] is confusing - can we get rid of the dialogue box altogether and have the 'for presentation' behavior be the default.
- Seems to be general aggreement with this suggestions
- AI: Amina - find out what does realize implied links do? If we don't need it delete
- Harold's interface issues
- 1. Can we make the icons at the top of the windows be larger? Some people find them way too small.
- Amina - trade off - could cause problems for screen real estate
- Jen - Perhaps we should make it configurable
- General agreement to configurable option for this?
- Can we have change the windowing setup so that detached windows don't always stay on top?
- 1. Can we make the icons at the top of the windows be larger? Some people find them way too small.
- Discussion of graph viewing and graph editor:
- Jen has had problems showing all ancestors to root with graph editor- needs to investigate further to write bug report.
- Graph viewer - still buggy. Doesn't work with RBR, needs LBL to display complete path to root.