OEWG 20090804: Difference between revisions
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[[Category:OBO-Edit working group]] | |||
OBO-Edit Working Group, Tuesday August 4th, 2009 9.30 a.m. PST <br> | OBO-Edit Working Group, Tuesday August 4th, 2009 9.30 a.m. PST <br> | ||
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pin: 601425<br> | pin: 601425<br> | ||
Agenda/Chair:Amina <br> | |||
Minutes: Amina <br> | |||
Attendees: Midori, Melissa, Jen, Harold, KarenC, Amina | |||
==Action items carried over== | |||
Miscellaneous | |||
==Discussion items== | |||
* OBO-Edit2.1beta1 release | |||
** Harold: tested lock view and mentioned problem with graphviz for OE2 fixed | |||
** Midori: regular editing works fine. | |||
* Amina talks about the OBO-Edit talk ICBO meeting | |||
** Kudos to DavidOS for his OBO-Edit tutorial | |||
** Lots of new OE users in the audience. | |||
** Sourceforge down on the day of the demo so the releases were put up on oboedit.org | |||
* OBOMerge bug | |||
** [https://sourceforge.net/tracker/?func=detail&aid=2829754&group_id=36855&atid=418257 obomerge loses a few tags] <font color=blue> </font> | |||
* Melissa: asked a question about relations being saved out through filtered save. | |||
* Melissa explains use of synch tool | |||
** plugin developed by Jim Balhoff. | |||
** load two ontologies that have xrefs to each other - term names that have same names but diff xrefs and dbxrefs or same xrefs but diff names - we use it as we have ZAO specific subsets that should be in cell ontology or TAO ontology.. that's what we're using it for. | |||
** https://www.phenoscape.org/wiki/Synchronization_Tool | |||
** Amina mentions porting the sync tool to be a part of OBO-Edit | |||
** Melissa asks everyone if they find the synch tool useful | |||
** Midori: might be useful to groups that use GO to synch their ontology | |||
* Karen: recently one of the SGD ppl noticed terms added to yeast GO slim not added by them. They could've cloned terms and also cloned subsets that went ahead with them. | |||
** discussion about what should get cloned and what should not get cloned | |||
** cloning levels should be user configurable | |||
** All: we would not want to be cloning subsets so we should think about behavior | |||
** [https://sourceforge.net/tracker/index.php?func=detail&aid=1802940&group_id=36855&atid=418260 should the clone function also clone dbxrefs?] <font color=blue> </font> | |||
* Midori: large part of the problem are the Text Editor tabs | |||
* Amina suggests we should think about a new layout for the Text Editor | |||
** lots of going back and forth between the keyboard and mouse | |||
* Jen: was wondering if we could use the voip line or clackpoint as some folks are not clear on the line. | |||
** Multiple problems associated with the conference line and clackpoint. | |||
** Judy has given OE thumbs up to use the GO conference line for weekly calls. | |||
** The group decides to continue using the GO line along with webex as all members of the working group are familiar with this meeting setting. | |||
==Action Items== | ==Action Items== | ||
BUGS: | |||
# [https://sourceforge.net/tracker/?func=detail&aid=2829754&group_id=36855&atid=418257 obomerge loses a few tags] <font color=blue> </font> | |||
Amina: | |||
- Put up chris's and OBO-Edit ICBO slides as a teaching resource | |||
skype into call | |||
- send out OEWG calendar subscription email again | |||
==Links== | ==Links== | ||
[[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG Meeting agenda and minutes List]] | [[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG Meeting agenda and minutes List]] |
Latest revision as of 16:56, 30 June 2014
OBO-Edit Working Group, Tuesday August 4th, 2009 9.30 a.m. PST
Conference call details:
US: 1-888-727-6732
Outside US: 1-719-867-3417
pin: 601425
Agenda/Chair:Amina
Minutes: Amina
Attendees: Midori, Melissa, Jen, Harold, KarenC, Amina
Action items carried over
Miscellaneous
Discussion items
- OBO-Edit2.1beta1 release
- Harold: tested lock view and mentioned problem with graphviz for OE2 fixed
- Midori: regular editing works fine.
- Amina talks about the OBO-Edit talk ICBO meeting
- Kudos to DavidOS for his OBO-Edit tutorial
- Lots of new OE users in the audience.
- Sourceforge down on the day of the demo so the releases were put up on oboedit.org
- OBOMerge bug
- Melissa: asked a question about relations being saved out through filtered save.
- Melissa explains use of synch tool
- plugin developed by Jim Balhoff.
- load two ontologies that have xrefs to each other - term names that have same names but diff xrefs and dbxrefs or same xrefs but diff names - we use it as we have ZAO specific subsets that should be in cell ontology or TAO ontology.. that's what we're using it for.
- https://www.phenoscape.org/wiki/Synchronization_Tool
- Amina mentions porting the sync tool to be a part of OBO-Edit
- Melissa asks everyone if they find the synch tool useful
- Midori: might be useful to groups that use GO to synch their ontology
- Karen: recently one of the SGD ppl noticed terms added to yeast GO slim not added by them. They could've cloned terms and also cloned subsets that went ahead with them.
- discussion about what should get cloned and what should not get cloned
- cloning levels should be user configurable
- All: we would not want to be cloning subsets so we should think about behavior
- should the clone function also clone dbxrefs?
- Midori: large part of the problem are the Text Editor tabs
- Amina suggests we should think about a new layout for the Text Editor
- lots of going back and forth between the keyboard and mouse
- Jen: was wondering if we could use the voip line or clackpoint as some folks are not clear on the line.
- Multiple problems associated with the conference line and clackpoint.
- Judy has given OE thumbs up to use the GO conference line for weekly calls.
- The group decides to continue using the GO line along with webex as all members of the working group are familiar with this meeting setting.
Action Items
BUGS:
Amina: - Put up chris's and OBO-Edit ICBO slides as a teaching resource skype into call - send out OEWG calendar subscription email again