Difference between revisions of "OEWG 20090804"

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[[Category:OBO-Edit working group]]
OBO-Edit Working Group, Tuesday August 4th, 2009 9.30 a.m. PST <br>
OBO-Edit Working Group, Tuesday August 4th, 2009 9.30 a.m. PST <br>


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pin: 601425<br>
pin: 601425<br>


Agenda/Chair:Amina <br>
Minutes: Amina <br>
Attendees: Midori, Melissa, Jen, Harold, KarenC, Amina


Agenda/Chair: <br>
==Action items carried over==
Minutes: <br>
Miscellaneous
Attendees:


==Action items carried over==


==Discussion items==
* OBO-Edit2.1beta1 release
** Harold: tested lock view and mentioned problem with graphviz for OE2 fixed
** Midori: regular editing works fine.
* Amina talks about the OBO-Edit talk ICBO meeting
** Kudos to DavidOS for his OBO-Edit tutorial
** Lots of new OE users in the audience.
** Sourceforge down on the day of the demo so the releases were put up on oboedit.org
* OBOMerge bug
**  [https://sourceforge.net/tracker/?func=detail&aid=2829754&group_id=36855&atid=418257 obomerge loses a few tags] <font color=blue> </font>
* Melissa: asked a question about relations being saved out through filtered save.
* Melissa explains use of synch tool
** plugin developed by Jim Balhoff.
** load two ontologies that have xrefs to each other - term names that have same names but diff xrefs and dbxrefs or same xrefs but diff names - we use it as we have ZAO specific subsets that should be in cell ontology or TAO ontology.. that's what we're using it for.
** https://www.phenoscape.org/wiki/Synchronization_Tool
** Amina mentions porting the sync tool to be a part of OBO-Edit
** Melissa asks everyone if they find the synch tool useful
** Midori: might be useful to groups that use GO to synch their ontology


* Karen: recently one of the SGD ppl noticed terms added to yeast GO slim not added by them. They could've cloned terms and also cloned subsets that went ahead with them.
** discussion about what should get cloned and what should not get cloned
** cloning levels should be user configurable
** All: we would not want to be cloning subsets so we should think about behavior
** [https://sourceforge.net/tracker/index.php?func=detail&aid=1802940&group_id=36855&atid=418260 should the clone function also clone dbxrefs?] <font color=blue> </font>




==Discussion items==
* Midori: large part of the problem are the Text Editor tabs
* Amina suggests we should think about a new layout for the Text Editor
** lots of going back and forth between the keyboard and mouse


Phenoscape synchronization tool - https://www.phenoscape.org/wiki/Synchronization_Tool


tracker - https://sourceforge.net/tracker/?group_id=224046&atid=1126441
* Jen: was wondering if we could use the voip line or clackpoint as some folks are not clear on the line.
** Multiple problems associated with the conference line and clackpoint.
** Judy has given OE thumbs up to use the GO conference line for weekly calls.
** The group decides to continue using the GO line along with webex as all members of the working group are familiar with this meeting setting.  




==Action Items==
==Action Items==
BUGS:
# [https://sourceforge.net/tracker/?func=detail&aid=2829754&group_id=36855&atid=418257 obomerge loses a few tags] <font color=blue> </font>


Amina:
- Put up chris's and OBO-Edit ICBO slides as a teaching resource
skype into call
- send out OEWG calendar subscription email again


==Links==
==Links==
[[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG Meeting agenda and minutes List]]
[[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG Meeting agenda and minutes List]]

Latest revision as of 16:56, 30 June 2014

OBO-Edit Working Group, Tuesday August 4th, 2009 9.30 a.m. PST

Conference call details:
US: 1-888-727-6732
Outside US: 1-719-867-3417
pin: 601425

Agenda/Chair:Amina
Minutes: Amina
Attendees: Midori, Melissa, Jen, Harold, KarenC, Amina

Action items carried over

Miscellaneous


Discussion items

  • OBO-Edit2.1beta1 release
    • Harold: tested lock view and mentioned problem with graphviz for OE2 fixed
    • Midori: regular editing works fine.
  • Amina talks about the OBO-Edit talk ICBO meeting
    • Kudos to DavidOS for his OBO-Edit tutorial
    • Lots of new OE users in the audience.
    • Sourceforge down on the day of the demo so the releases were put up on oboedit.org


  • Melissa: asked a question about relations being saved out through filtered save.
  • Melissa explains use of synch tool
    • plugin developed by Jim Balhoff.
    • load two ontologies that have xrefs to each other - term names that have same names but diff xrefs and dbxrefs or same xrefs but diff names - we use it as we have ZAO specific subsets that should be in cell ontology or TAO ontology.. that's what we're using it for.
    • https://www.phenoscape.org/wiki/Synchronization_Tool
    • Amina mentions porting the sync tool to be a part of OBO-Edit
    • Melissa asks everyone if they find the synch tool useful
    • Midori: might be useful to groups that use GO to synch their ontology
  • Karen: recently one of the SGD ppl noticed terms added to yeast GO slim not added by them. They could've cloned terms and also cloned subsets that went ahead with them.
    • discussion about what should get cloned and what should not get cloned
    • cloning levels should be user configurable
    • All: we would not want to be cloning subsets so we should think about behavior
    • should the clone function also clone dbxrefs?


  • Midori: large part of the problem are the Text Editor tabs
  • Amina suggests we should think about a new layout for the Text Editor
    • lots of going back and forth between the keyboard and mouse


  • Jen: was wondering if we could use the voip line or clackpoint as some folks are not clear on the line.
    • Multiple problems associated with the conference line and clackpoint.
    • Judy has given OE thumbs up to use the GO conference line for weekly calls.
    • The group decides to continue using the GO line along with webex as all members of the working group are familiar with this meeting setting.


Action Items

BUGS:

  1. obomerge loses a few tags

Amina: - Put up chris's and OBO-Edit ICBO slides as a teaching resource skype into call - send out OEWG calendar subscription email again

Links

Back to OEWG Meeting agenda and minutes List