OEWG 20091001: Difference between revisions
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[[Category:OBO-Edit working group]] | |||
OBO-Edit Working Group, Thursday October 1st, 2009 8.30 a.m. PDT <br> | OBO-Edit Working Group, Thursday October 1st, 2009 8.30 a.m. PDT <br> | ||
Line 7: | Line 8: | ||
Agenda/Chair: Amina<br> | Agenda/Chair: Amina<br> | ||
Minutes: | Minutes: Amina<br> | ||
Attendees: | Attendees: Jen, Midori, DavidOS, Harold, Amina | ||
==Action items carried over== | ==Action items carried over== | ||
None | |||
==Discussion items== | ==Discussion items== | ||
* OBO-Edit at the GO Consortium meeting last week | * OBO-Edit at the GO Consortium meeting last week | ||
** Term generation plugin demo was useful in demonstrating working and was very well received by the community | |||
Jen: Does not show the source | |||
Midori: The tool goes and finds everything | |||
Jen: most of the things we're searching i know the source | |||
Harold: boilerplate definition..standard way of saying things.. you have that boilerplate in front of you | |||
standard support | |||
Amina discusses semantic parser manager working and improvements | |||
* Midoris xps presentation at the GO meeting | |||
** xps editor demo | |||
* Interoperability support agenda item at GO meeting | |||
** Chris said DONE | |||
DavidOS: obo files load ok in protege<br> | |||
If you load owl files it mangles the ids etc<br> | |||
I dont know to what extent interoperability of OBO-Edit with OWL is required<br> | |||
The one built in to protege is not bad but messes up OBO Ids<br> | |||
Theres also a weird one built at stanford which is buried somewhere<br> | |||
The decisions and requirements for interoperability have to be clearly laid out<br> | |||
** Short discussion about the GO grant renewal and speculation about tool development requirements | |||
DavidOS: Ideas about OBO-Edit3 and how it should work with the owl world too, plugin for protege etc<br> | |||
* Harold: application crashes when I first load it and then its fine the rest of the day<br> | |||
DavidOS: 2.1 is more crash prone than 2.0<br> | |||
DOS: switching between reasoners is really bad<br> | |||
Midori - using one reasoner and then switching it off<br> | |||
- off after done reasoning<br> | |||
Harold: im going to try doing it now<br> | |||
* 2.1 Release pending documentation and verification manager fixes. | * 2.1 Release pending documentation and verification manager fixes. | ||
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==== Bugs ==== | ==== Bugs ==== | ||
* [https://sourceforge.net/tracker/?func=detail&aid=2836927&group_id=36855&atid=418257 disjoint links] | * [https://sourceforge.net/tracker/?func=detail&aid=2836927&group_id=36855&atid=418257 disjoint links] <font color="blue"> ? </font> | ||
<font color="blue"> ? </font> | |||
Jen: Wonders if this is a side effect of the way some components such as the Tree Viewer hide disjoint links in the display. <br> | |||
A quick test of the filters in the OTE shows disjoint links fine.<br> | |||
Amina: will investigate | |||
==== Features ==== | ==== Features ==== | ||
Line 28: | Line 66: | ||
==Action Items== | ==Action Items== | ||
* Semantic parser manager documentation, working and future plan | |||
* Reasoner bugs - cancel and switching between terms causes crashes | |||
* Investigate crashes looking at Harold's log file | |||
==Links== | ==Links== | ||
[[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG Meeting agenda and minutes List]] | [[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG Meeting agenda and minutes List]] |
Latest revision as of 16:58, 30 June 2014
OBO-Edit Working Group, Thursday October 1st, 2009 8.30 a.m. PDT
Conference call details:
US: 1-888-727-6732
Outside US: 1-719-867-3417
pin: 601425
Agenda/Chair: Amina
Minutes: Amina
Attendees: Jen, Midori, DavidOS, Harold, Amina
Action items carried over
None
Discussion items
- OBO-Edit at the GO Consortium meeting last week
- Term generation plugin demo was useful in demonstrating working and was very well received by the community
Jen: Does not show the source Midori: The tool goes and finds everything Jen: most of the things we're searching i know the source Harold: boilerplate definition..standard way of saying things.. you have that boilerplate in front of you standard support
Amina discusses semantic parser manager working and improvements
- Midoris xps presentation at the GO meeting
- xps editor demo
- Interoperability support agenda item at GO meeting
- Chris said DONE
DavidOS: obo files load ok in protege
If you load owl files it mangles the ids etc
I dont know to what extent interoperability of OBO-Edit with OWL is required
The one built in to protege is not bad but messes up OBO Ids
Theres also a weird one built at stanford which is buried somewhere
The decisions and requirements for interoperability have to be clearly laid out
- Short discussion about the GO grant renewal and speculation about tool development requirements
DavidOS: Ideas about OBO-Edit3 and how it should work with the owl world too, plugin for protege etc
- Harold: application crashes when I first load it and then its fine the rest of the day
DavidOS: 2.1 is more crash prone than 2.0
DOS: switching between reasoners is really bad
Midori - using one reasoner and then switching it off
- off after done reasoning
Harold: im going to try doing it now
- 2.1 Release pending documentation and verification manager fixes.
Bugs
Jen: Wonders if this is a side effect of the way some components such as the Tree Viewer hide disjoint links in the display.
A quick test of the filters in the OTE shows disjoint links fine.
Amina: will investigate
Features
Action Items
- Semantic parser manager documentation, working and future plan
- Reasoner bugs - cancel and switching between terms causes crashes
- Investigate crashes looking at Harold's log file