OEWG 20091117
OBO-Edit Working Group, Tuesday November 17th, 2009 8.30 a.m. PDT
Conference call details:
US: 1-888-727-6732
Outside US: 1-719-867-3417
pin: 601425
Agenda/Chair: Amina
Minutes: Jen
Attendees:
Action items carried over
Discussion items
Bugs
I (Terry Meehan, MGI) am generating cross-product definitions in the Cell Ontology. To do this, I load the Cell ontology (CL), the three GO ontologies, PR0 and the Uberon ontology. I accidentally generated a cyclical relationship between the two terms after reasoning (see pictures). I *think* this resulted from using two related GO processes in the cross-product definition but am not sure due to some buggy issues.
- The "Explanation" feature both in the graph editor and in the Assert Implied links panel fail to explain reasoning. This is an issue Amina and Chris are aware of.
- Perhaps related... the Parent editor fails to show implied links, even when the checkbox is checked.
- Tree editor fails to show any relationship between the two terms.
- Should have the verification manager prevented this cyclical relationship from occurring? The reasoner stopped running checks due to the number of errors (>200). Most of these errors are miss-spellings in Uberon.
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Before reasoning
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After reasoning
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Tree editor-After reasoning