OEWG 20091215: Difference between revisions

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[[Category:OBO-Edit working group]]
OBO-Edit Working Group, Tuesday December 15th, 2009 8.30 a.m. PDT <br>
OBO-Edit Working Group, Tuesday December 15th, 2009 8.30 a.m. PDT <br>


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== Bug and Feature Tracker Updates ==
== Bug and Feature Tracker Updates ==


*[https://sourceforge.net/tracker/?func=detail&aid=2883913&group_id=36855&atid=418257 Unable to add relationships] <font color="blue">  Fixed </font>
*[http://sourceforge.net/tracker/?func=detail&atid=418257&aid=2914257&group_id=36855 When a term is cloned, intersections become relationships] <font color="blue">  In progress</font>
*[https://sourceforge.net/tracker/?func=detail&aid=2899760&group_id=36855&atid=418257 Too easy to make link to self in graph editor] <font color="blue">  In progress </font>
*[https://sourceforge.net/tracker/?func=detail&aid=2896233&group_id=36855&atid=418257 Memory preference stuck at 1042] <font color="blue"> To Do  </font>
*[https://sourceforge.net/tracker/?func=detail&aid=2874878&group_id=36855&atid=418257 Missing log files in Mac] <font color="blue"> Done  </font>
*[https://sourceforge.net/tracker/?func=detail&aid=2880542&group_id=36855&atid=418257 obo-merge def merge issue] <font color="blue">  </font>
**Related to relationship-addition bug, so shoud be fixed now; Amina will test
*[https://sourceforge.net/tracker/?func=detail&aid=2784937&group_id=36855&atid=418257 verification plugin - not seeing dictionary?] <font color="blue"> To Do  </font>
*[https://sourceforge.net/tracker/?func=detail&aid=2828905&group_id=36855&atid=418257 verification config in 2.1 test release] <font color="blue"> To Do  </font>
*[https://sourceforge.net/tracker/?func=detail&aid=2914257&group_id=36855&atid=418257 Clone bug] also almost fixed
*The "Explanation" feature both in the graph editor and in the Assert Implied links panel fail to explain reasoning sometimes <font color="blue"> In Progress  </font>
* Advanced Save - Include is_a closure for cross-referenced terms <font color="blue"> Done </font>
David: also note other bug report on parent editor changing intersections to relationships ... [https://sourceforge.net/tracker/?func=detail&aid=2817514&group_id=36855&atid=418257 Changing relationship type in parent editor blitzes XP stat]
Bugs at 6 or above are fixed or in progress for the next release.


==Discussion items==
==Discussion items==


Jen: I have updated the standard dictionary file to include all the new words in the live GO. It is now included in the OBO-Edit source repository. I can also distribute this file if people would like to try copying it into their config folder as a stop gap until the next release.
:DavidOS asks what will happen with the user-defined dictionary; doesn't want GO-centric update to wipe out his existing standard dictionary. Is user.dict still not working?


:More specifics on current behavior, quick-fix message wording, etc. Needs better documentation, and perhaps GO should switch to user.dict once it's working again.
:Amina will improve quick-fix message and user guide.
Brief discussion of Plant Ontology developers switching to OBO-Edit.
DavidOS has had a "catastrophic failure of obomerge"; still investigating; will send files to Amina. Lost lots of intersections this time -- though neither he nor George Gkoutos has had this particular problem before.
:Jen has a set of test files for obomerge; David will send more fodder to test what he's doing with it.
[Some talk about console error messages that went too fast for your humble minute-taker ...]


==Action Items==  
==Action Items==  


Amina: will check Terry's file one more time before release
Reasoner: Forward Chaining reasoner will be removed; bug report open about Rule-based reasoner not running disjointedness check. Eventually plan to have just the (fixed) Rule-based reasoner.
One more meeting next week, although several people will be away.
All: After release, choose next set of features & bugs to raise priority.




==Links==
==Links==
[[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG Meeting agenda and minutes List]]
[[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG Meeting agenda and minutes List]]

Latest revision as of 17:27, 30 June 2014

OBO-Edit Working Group, Tuesday December 15th, 2009 8.30 a.m. PDT

Conference call details: New GOC conference call numbers
US: 1 866 953 9688
Outside US: UK 0808 238 6001 (Midori can email numbers for other countries as needed)
pin: 801561

Agenda/Chair: Amina
Minutes: Midori
Attendees:


Action items carried over

Bug and Feature Tracker Updates


  • The "Explanation" feature both in the graph editor and in the Assert Implied links panel fail to explain reasoning sometimes In Progress
  • Advanced Save - Include is_a closure for cross-referenced terms Done

David: also note other bug report on parent editor changing intersections to relationships ... Changing relationship type in parent editor blitzes XP stat

Bugs at 6 or above are fixed or in progress for the next release.

Discussion items

Jen: I have updated the standard dictionary file to include all the new words in the live GO. It is now included in the OBO-Edit source repository. I can also distribute this file if people would like to try copying it into their config folder as a stop gap until the next release.

DavidOS asks what will happen with the user-defined dictionary; doesn't want GO-centric update to wipe out his existing standard dictionary. Is user.dict still not working?
More specifics on current behavior, quick-fix message wording, etc. Needs better documentation, and perhaps GO should switch to user.dict once it's working again.
Amina will improve quick-fix message and user guide.

Brief discussion of Plant Ontology developers switching to OBO-Edit.

DavidOS has had a "catastrophic failure of obomerge"; still investigating; will send files to Amina. Lost lots of intersections this time -- though neither he nor George Gkoutos has had this particular problem before.

Jen has a set of test files for obomerge; David will send more fodder to test what he's doing with it.

[Some talk about console error messages that went too fast for your humble minute-taker ...]

Action Items

Amina: will check Terry's file one more time before release

Reasoner: Forward Chaining reasoner will be removed; bug report open about Rule-based reasoner not running disjointedness check. Eventually plan to have just the (fixed) Rule-based reasoner.

One more meeting next week, although several people will be away.

All: After release, choose next set of features & bugs to raise priority.


Links

Back to OEWG Meeting agenda and minutes List