OEWG 20091215: Difference between revisions
No edit summary |
No edit summary |
||
(6 intermediate revisions by 3 users not shown) | |||
Line 1: | Line 1: | ||
[[Category:OBO-Edit working group]] | |||
OBO-Edit Working Group, Tuesday December 15th, 2009 8.30 a.m. PDT <br> | OBO-Edit Working Group, Tuesday December 15th, 2009 8.30 a.m. PDT <br> | ||
Line 19: | Line 20: | ||
== Bug and Feature Tracker Updates == | == Bug and Feature Tracker Updates == | ||
*[https://sourceforge.net/tracker/?func=detail&aid=2883913&group_id=36855&atid=418257 Unable to add relationships] <font color="blue"> Fixed </font> | |||
*[http://sourceforge.net/tracker/?func=detail&atid=418257&aid=2914257&group_id=36855 When a term is cloned, intersections become relationships] <font color="blue"> In progress</font> | |||
*[https://sourceforge.net/tracker/?func=detail&aid=2899760&group_id=36855&atid=418257 Too easy to make link to self in graph editor] <font color="blue"> In progress </font> | |||
*[https://sourceforge.net/tracker/?func=detail&aid=2896233&group_id=36855&atid=418257 Memory preference stuck at 1042] <font color="blue"> To Do </font> | |||
*[https://sourceforge.net/tracker/?func=detail&aid=2874878&group_id=36855&atid=418257 Missing log files in Mac] <font color="blue"> Done </font> | |||
*[https://sourceforge.net/tracker/?func=detail&aid=2880542&group_id=36855&atid=418257 obo-merge def merge issue] <font color="blue"> </font> | |||
**Related to relationship-addition bug, so shoud be fixed now; Amina will test | |||
*[https://sourceforge.net/tracker/?func=detail&aid=2784937&group_id=36855&atid=418257 verification plugin - not seeing dictionary?] <font color="blue"> To Do </font> | |||
*[https://sourceforge.net/tracker/?func=detail&aid=2828905&group_id=36855&atid=418257 verification config in 2.1 test release] <font color="blue"> To Do </font> | |||
*[https://sourceforge.net/tracker/?func=detail&aid=2914257&group_id=36855&atid=418257 Clone bug] also almost fixed | |||
*The "Explanation" feature both in the graph editor and in the Assert Implied links panel fail to explain reasoning sometimes <font color="blue"> In Progress </font> | |||
* Advanced Save - Include is_a closure for cross-referenced terms <font color="blue"> Done </font> | |||
David: also note other bug report on parent editor changing intersections to relationships ... [https://sourceforge.net/tracker/?func=detail&aid=2817514&group_id=36855&atid=418257 Changing relationship type in parent editor blitzes XP stat] | |||
Bugs at 6 or above are fixed or in progress for the next release. | |||
==Discussion items== | ==Discussion items== | ||
Jen: I have updated the standard dictionary file to include all the new words in the live GO. It is now included in the OBO-Edit source repository. I can also distribute this file if people would like to try copying it into their config folder as a stop gap until the next release. | |||
:DavidOS asks what will happen with the user-defined dictionary; doesn't want GO-centric update to wipe out his existing standard dictionary. Is user.dict still not working? | |||
:More specifics on current behavior, quick-fix message wording, etc. Needs better documentation, and perhaps GO should switch to user.dict once it's working again. | |||
:Amina will improve quick-fix message and user guide. | |||
Brief discussion of Plant Ontology developers switching to OBO-Edit. | |||
DavidOS has had a "catastrophic failure of obomerge"; still investigating; will send files to Amina. Lost lots of intersections this time -- though neither he nor George Gkoutos has had this particular problem before. | |||
:Jen has a set of test files for obomerge; David will send more fodder to test what he's doing with it. | |||
[Some talk about console error messages that went too fast for your humble minute-taker ...] | |||
==Action Items== | ==Action Items== | ||
Amina: will check Terry's file one more time before release | |||
Reasoner: Forward Chaining reasoner will be removed; bug report open about Rule-based reasoner not running disjointedness check. Eventually plan to have just the (fixed) Rule-based reasoner. | |||
One more meeting next week, although several people will be away. | |||
All: After release, choose next set of features & bugs to raise priority. | |||
==Links== | ==Links== | ||
[[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG Meeting agenda and minutes List]] | [[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG Meeting agenda and minutes List]] |
Latest revision as of 17:27, 30 June 2014
OBO-Edit Working Group, Tuesday December 15th, 2009 8.30 a.m. PDT
Conference call details: New GOC conference call numbers
US: 1 866 953 9688
Outside US: UK 0808 238 6001 (Midori can email numbers for other countries as needed)
pin: 801561
Agenda/Chair: Amina
Minutes: Midori
Attendees:
Action items carried over
Bug and Feature Tracker Updates
- Too easy to make link to self in graph editor In progress
- Memory preference stuck at 1042 To Do
- Missing log files in Mac Done
- obo-merge def merge issue
- Related to relationship-addition bug, so shoud be fixed now; Amina will test
- verification plugin - not seeing dictionary? To Do
- verification config in 2.1 test release To Do
- Clone bug also almost fixed
- The "Explanation" feature both in the graph editor and in the Assert Implied links panel fail to explain reasoning sometimes In Progress
- Advanced Save - Include is_a closure for cross-referenced terms Done
David: also note other bug report on parent editor changing intersections to relationships ... Changing relationship type in parent editor blitzes XP stat
Bugs at 6 or above are fixed or in progress for the next release.
Discussion items
Jen: I have updated the standard dictionary file to include all the new words in the live GO. It is now included in the OBO-Edit source repository. I can also distribute this file if people would like to try copying it into their config folder as a stop gap until the next release.
- DavidOS asks what will happen with the user-defined dictionary; doesn't want GO-centric update to wipe out his existing standard dictionary. Is user.dict still not working?
- More specifics on current behavior, quick-fix message wording, etc. Needs better documentation, and perhaps GO should switch to user.dict once it's working again.
- Amina will improve quick-fix message and user guide.
Brief discussion of Plant Ontology developers switching to OBO-Edit.
DavidOS has had a "catastrophic failure of obomerge"; still investigating; will send files to Amina. Lost lots of intersections this time -- though neither he nor George Gkoutos has had this particular problem before.
- Jen has a set of test files for obomerge; David will send more fodder to test what he's doing with it.
[Some talk about console error messages that went too fast for your humble minute-taker ...]
Action Items
Amina: will check Terry's file one more time before release
Reasoner: Forward Chaining reasoner will be removed; bug report open about Rule-based reasoner not running disjointedness check. Eventually plan to have just the (fixed) Rule-based reasoner.
One more meeting next week, although several people will be away.
All: After release, choose next set of features & bugs to raise priority.