OEWG 20120501: Difference between revisions

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* Fixed data format to use 24 hours for writing ISO 8601 dates (e.g., creation_date). (Heiko)
* Fixed data format to use 24 hours for writing ISO 8601 dates (e.g., creation_date). (Heiko)
==Currently working on==
* [http://sourceforge.net/tracker/?func=detail&atid=3521387&aid=3517323&group_id=36855 link filter not working properly]
* [http://sourceforge.net/tracker/?func=detail&atid=3521387&aid=3517323&group_id=36855 link filter not working properly]
** "Regardless of what I select in the first drop-down menu (self, type, parent, child), my only options are Namespace, Is intersection, Is necessary, Is implied, and Is redundant."
** "Regardless of what I select in the first drop-down menu (self, type, parent, child), my only options are Namespace, Is intersection, Is necessary, Is implied, and Is redundant."
** I broke this in 2.1.1-b7 as a side effect of fixing another bug: [http://sourceforge.net/tracker/?func=detail&atid=3487892&aid=3517323&group_id=36855 In compound ancestor/descendant queries, relation list bad]
** I broke this in 2.1.1-b7 as a side effect of fixing another bug: [http://sourceforge.net/tracker/?func=detail&atid=3487892&aid=3517323&group_id=36855 In compound ancestor/descendant queries, relation list bad]
** I fixed this, but have one question: I know parent and child should show all the options (Name, Synonym, etc.), but what about Type?
** I fixed this, but have one question: I know parent and child should show all the options (Name, Synonym, etc.), but what about Type?
==Currently working on==


==Discussion==
==Discussion==

Revision as of 13:24, 30 April 2012

OBO-Edit Working Group Meeting: Tuesday, May 2, 2012, 8:30am PDT

Conference call numbers:
US: 1 866 953 9688
UK: 0808 238 6001
PIN: 801561

Agenda/Chair: Nomi Harris
Minutes: Nomi
Attendees:

Bug and Feature Trackers

Fixed or newly added since last meeting

  • Fixed data format to use 24 hours for writing ISO 8601 dates (e.g., creation_date). (Heiko)
  • link filter not working properly
    • "Regardless of what I select in the first drop-down menu (self, type, parent, child), my only options are Namespace, Is intersection, Is necessary, Is implied, and Is redundant."
    • I broke this in 2.1.1-b7 as a side effect of fixing another bug: In compound ancestor/descendant queries, relation list bad
    • I fixed this, but have one question: I know parent and child should show all the options (Name, Synonym, etc.), but what about Type?

Currently working on

Discussion

  • Michael Ashburner reported that when he added two more remark: lines to gaz.obo (in a text editor) and then roundtripped it through OBO-Edit, it lost the last two remark: lines he put in.
    • I am not completely sure I interpreted the scenario correctly, as his description was brief.
    • He was using an extremely old version of OE but said that he also tried the latest version and had the same problem.
    • I was unable to download gaz.obo from the URL Michael gave me: http://obo.cvs.sourceforge.net/viewvc/obo/obo/ontology/environmental/ (and Michael said the latest commit of it failed--maybe a SourceForge problem?)
    • I tried adding the remark lines that Michael sent me to gene_ontology_write.obo (which, like gaz.obo, is big) and roundtripping, and that worked fine.
    • There is nothing in OE that limits how many remark lines you can have, and at any rate it seems odd that it would forget the last two remarks that were added (they are not the last two in the list, they are both somewhere in the middle of the list), so I suspect that there's a non-OE problem going on.
  • I would like to do another official release soon (which I think I'll call 2.2 because 2.1.1 is too confusing)

Links

Back to OEWG meeting agenda and minutes list