OEWG 20120515: Difference between revisions
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==Discussion== | ==Discussion== | ||
* I would like to do another OBO-Edit official release soon (which | * I would like to do another OBO-Edit official release soon (which I'll call 2.2 because 2.1.1 is too confusing) | ||
** Please try out | ** Please try out release 2.2-rc1 and report any problems: http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/2.2-rc1/ | ||
==Links== | ==Links== | ||
[[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG meeting agenda and minutes list]] | [[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG meeting agenda and minutes list]] |
Revision as of 01:43, 15 May 2012
OBO-Edit Working Group Meeting: Tuesday, June 5, 2012, 8:30am PDT
Conference call numbers:
US: 1 866 953 9688
UK: 0808 238 6001
PIN: 801561
Agenda/Chair: Nomi Harris
Minutes: Nomi
Attendees:
Bug and Feature Trackers
Fixed or newly added since last meeting
- Cycle Check doesn't work
- New cycle check method finds (possibly mixed-relationship) cycles by checking for objects that are descendants of one of their own children.
- The check works whether or not you have the reasoner on, but it doesn't find cycles that involve implied links found by the reasoner.
- The new cycle check is set by default to run on save and on manual verification; other times (e.g., on reasoner change) can be added by the user via the Verification Manager configuration panel.
- Name redundancy check not working in Text Editor
- It was checking for name redundancy when called with no arg (i.e., invoked from Verification Manager; check all terms) but not when called on a specific term (i.e., from Text Editor).
Currently working on
- Ramona reported that the reasoner seems much slower than it used to (took over a minute to reason over plant_ontology.obo).
- Nomi tried it and it ran as fast as ever (about 5 seconds for plant_ontology.obo). Not sure why it's going so slowly for Ramona.
Discussion
- I would like to do another OBO-Edit official release soon (which I'll call 2.2 because 2.1.1 is too confusing)
- Please try out release 2.2-rc1 and report any problems: http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/2.2-rc1/