OWLTools: Difference between revisions
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== Source == | == Source == | ||
The source is available on sourceforge | The source is CURRENTLY available on sourceforge, but is moving: | ||
* [http://geneontology.svn.sourceforge.net/viewvc/geneontology/OWLTools/ Browse OWLTools] | * [http://geneontology.svn.sourceforge.net/viewvc/geneontology/OWLTools/ Browse OWLTools] | ||
svn co https://geneontology.svn.sourceforge.net/svnroot/geneontology/OWLTools | svn co https://geneontology.svn.sourceforge.net/svnroot/geneontology/OWLTools | ||
New destination: | |||
* http://code.google.com/p/owltools/ | |||
== Dependencies == | == Dependencies == |
Revision as of 18:18, 11 March 2011
OWLTools (aka OWL2LS - OWL2 Life Sciences) is convenience java API on top of the OWL API. It provides
- convenience methods for OBO-like properties such as synonyms, textual definitions, obsoletion, replaced_by
- simple graph-like operations over ontologies
- visualization using the QuickGO graphs libraries
Java Docs
The javadocs can be browsed here:
Source
The source is CURRENTLY available on sourceforge, but is moving:
svn co https://geneontology.svn.sourceforge.net/svnroot/geneontology/OWLTools
New destination:
Dependencies
All required jars are included in the distribution. Notable dependencies are
- the OWL API (http://owlapi.sourceforge.net).
- in fact much of the owltools functionality is in providing a simple layer on the OWLAPI
- org.oboformat (http://code.google.com/p/oboformat/).
- this is only used if you are parsing owl ontologies from obo format. there are significant improvements over the obo parser that is part of the owlapi