OWLTools: Difference between revisions

Latest revision as of 13:57, 1 July 2014

OWLTools (aka OWL2LS - OWL2 Life Sciences) is convenience java API on top of the OWL API. It provides

convenience methods for OBO-like properties such as synonyms, textual definitions, obsoletion, replaced_by
simple graph-like operations over ontologies
visualization using the QuickGO graphs libraries

Documentation and code available from http://code.google.com/p/owltools/

@@ Line 1: / Line 1: @@
+[[Category:Software]]
 OWLTools (aka OWL2LS - OWL2 Life Sciences) is convenience java API on top of the OWL API. It provides
@@ Line 5: / Line 6: @@
 * visualization using the QuickGO graphs libraries
-== Java Docs ==
+Documentation and code available from http://code.google.com/p/owltools/
-The javadocs can be browsed here:
-* http://berkeleybop.org/owltools
-== Source ==
-The source is available on sourceforge. Note the location may change to googlecode:
-* [http://geneontology.svn.sourceforge.net/viewvc/geneontology/OWLTools/ Browse OWLTools]
-  svn co  https://geneontology.svn.sourceforge.net/svnroot/geneontology/OWLTools
-== Dependencies ==
-All required jars are included in the distribution. Notable dependencies are
-* the OWL API (http://owlapi.sourceforge.net).
-** in fact much of the owltools functionality is in providing a simple layer on the OWLAPI
-* org.oboformat (http://code.google.com/p/oboformat/).
-** this is only used if you are parsing owl ontologies from obo format. there are significant improvements over the obo parser that is part of the owlapi