OWLTools: Difference between revisions

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[[Category:Software]]
OWLTools (aka OWL2LS - OWL2 Life Sciences) is convenience java API on top of the OWL API. It provides
OWLTools (aka OWL2LS - OWL2 Life Sciences) is convenience java API on top of the OWL API. It provides


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* visualization using the QuickGO graphs libraries
* visualization using the QuickGO graphs libraries


== Java Docs ==
Documentation and code available from http://code.google.com/p/owltools/
 
The javadocs can be browsed here:
 
* http://berkeleybop.org/owltools
 
== Source ==
 
The source is CURRENTLY available on sourceforge, but is moving:
 
* [http://geneontology.svn.sourceforge.net/viewvc/geneontology/OWLTools/ Browse OWLTools]
 
  svn co  https://geneontology.svn.sourceforge.net/svnroot/geneontology/OWLTools
 
New destination:
 
* http://code.google.com/p/owltools/
 
== Dependencies ==
 
All required jars are included in the distribution. Notable dependencies are
 
* the OWL API (http://owlapi.sourceforge.net).
** in fact much of the owltools functionality is in providing a simple layer on the OWLAPI
* org.oboformat (http://code.google.com/p/oboformat/).
** this is only used if you are parsing owl ontologies from obo format. there are significant improvements over the obo parser that is part of the owlapi

Latest revision as of 13:57, 1 July 2014

OWLTools (aka OWL2LS - OWL2 Life Sciences) is convenience java API on top of the OWL API. It provides

  • convenience methods for OBO-like properties such as synonyms, textual definitions, obsoletion, replaced_by
  • simple graph-like operations over ontologies
  • visualization using the QuickGO graphs libraries

Documentation and code available from http://code.google.com/p/owltools/