Ontology meeting 2012-05-09
MINUTES: DAVID
45-minute call
FOLLOW-UP: chemical xps
For background, see discussion here: http://wiki.geneontology.org/index.php/Ontology_meeting_2012-05-02#DISCUSSION_ITEM_I:_Follow_up_on_chemical_xps
The google docs version of the compounds to sort out is here:
https://docs.google.com/spreadsheet/ccc?key=0AtGZO7sNc8MkdGlyYXlvOVhmMmNIUFVYTnk1SUtJS1E&pli=1#gid=0
Also, Jane is looking into missing xps using OBO-Edit/Protege - WORK IN PROGRESS
FOLLOW-UP: ChEBI paper
Chris, not sure if you've had a chance to work on this, see http://wiki.geneontology.org/index.php/Ontology_meeting_2012-05-02#DISCUSSION_ITEM_III:_Follow-up_on_papers:_ChEBI_and_TermGenie
FOLLOW-UP: TermGenie paper
Done since last call: half of all new term requests (51.8% to be precise) between Jan. and June 2010 could have been dealt with, at least in part, using TG templates. See http://gocwiki.geneontology.org/index.php/Template-able_Requests_Prior_To_TG
The google doc has been update with this info. What do we need to do next?
DISCUSSION ITEM I: Follow up on "Moving biological_process_xp_cellular_component into live GO"
See previous discussion here: http://wiki.geneontology.org/index.php?title=Ontology_meeting_2012-03-07
- I'm ready for all the transport ones - one hold up has been thinking of a family of relation names that generalizes over both transport and localization that encompasses the different roles (cargo, source, destination, conduit). If we decide on these we can just move this lot in straight away. There was a thread on the list about this w/ Midori a month or two ago -- cjm
Some of these (e.g. neuron projection) are in the scratch directory as cellular_component_xp_cell.obo.
Stems from this SF item: https://sourceforge.net/tracker/?func=detail&aid=3518879&group_id=36855&atid=440764
Also see this other SF item: https://sourceforge.net/tracker/?func=detail&aid=3410166&group_id=36855&atid=440764