Ontology meeting 2012-09-12

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Revision as of 12:03, 12 September 2012 by Jl242 (talk | contribs) (→‎New call times)
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45-minute meeting

MINUTES: Jane

ATTENDEES:

New call times

Possibly Thursdays at 8.30am/11.30am/4.30pm for 45 min?

  • Yes, as of nest week.
  • ACTION: Paola to change the GO calendar to reflect next time.

Project Management in JIRA

I've added most of our work into JIRA, and divided into notional monthly 'releases':

http://www.ebi.ac.uk/panda/jira/browse/GO?report=com.atlassian.jira.plugin.system.project:roadmap-panel

Let's have a look through the Sept release and see what we think. I propose that on the first Wed meeting of every month we look through our open issues and decide what we can get done that month.

Homeostasis xps

Chris has proposed a new relation - regulates_number_of (or similar) - which is defined by the property chain:

EquivalentTo homeostasis and regulates some (size and inheres_in some (population and composed_primarily_of some <X>))

for X homeostasis defs. Go ahead with those?

Localization template

Where are we on this - ready to go in?

FOLLOW-UP: EC numbers in GO - feasibility study

Carried over from a previous meeting: see Action Items and background here:

http://wiki.geneontology.org/index.php/Ontology_meeting_2012-08-08#FOLLOW-UP:_EC_numbers_in_GO_-_feasibility_study

FOLLOW-UP: ChEBI paper

FOLLOW-UP: EXISTS_NOT_ENTAILED GO-ChEBI xps

Announce new TG templates

reiterate old ones and highlight new:

  response to (a chemical compound)
  (chemical compound) transmembrane transporter activity
  cell component part of other cell component
  any other new ones?

Last announcement: June 25, 2012 with these

  regulation of biological process
  regulation of molecular function
  binding (to a chemical compound)
  transport (of a chemical compound)
  process involved in another process
  metabolism/catabolism/biosynthesis of a chemical compound
  process occurring in a part of a cell
  process regulated by another (regulating) process