Ontology meeting 2012-11-08

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MINUTES: Tanya

ATTENDEES:


FOLLOW-UP: ChEBI paper

Tanya to report.


FOLLOW-UP: import/export template

David and Tanya to report. Added to go_xp_chebi.obo. Heiko to begin working on template when opportunity arises.

CHEBI roles in crossproduct file

We currently have xps to CHEBI terms that are roles in the xp file. Do we keep them or not? If we keep them, should we allow TermGenie to create terms using such CHEBI terms? For example, SF request [1].

  [Term]
  id: GO:0042493 ! response to drug
  intersection_of: GO:0050896 ! response to stimulus
  intersection_of: has_input CHEBI:23888 ! drug


TermGenie template for 'cellular response to'

This type of term is frequently requested via SF. I think we've discussed its addition previously, but don't remember if we reached a resolution - can't find anything on wiki or email threads. Would it be possible to implement a sort of 'decision tree' for the non-ChEBI parents? Or shall we leave this for the non-template-able term requests procedure?

E.g. see this SF request: https://sourceforge.net/tracker/?func=detail&aid=3580560&group_id=36855&atid=440764 [Paola]


Transport and localization logical definitions

Follow up from last week, Jane to report.


Endosomal transport

Follow up from last week, Tanya to report.

SF corner

disulphide bond enzymes

Is it okay to merge a process into a function? See [2]

Enzymes that can use more than one substrate

Are they separate molecular functions? See SF3571860 and GO:0016619.