Ontology meeting 2013-01-17: Difference between revisions

Revision as of 10:42, 16 January 2013

MINUTES: Paola

ATTENDEES:

ChEBI paper

Where are we?

Merge behaviour

This arose from this SF item [1]. When terms are merged in OE, the subsets from the merged term are lost. Ideally we'd want them retained - is it possible to make this fix in OE? Or too time-consuming?

Single-step processes

Rama and Paul have voiced concerns about processes that have some overlap with functions e.g. phosphorylation/kinase. See email thread. We should discuss this.

Follow-up on TermGenie free form

Protein/glycoprotein/lipoprotein terms in ChEBI

Chris: Anything new since http://wiki.geneontology.org/index.php/Ontology_meeting_2012-12-20#Follow-up:_Protein.2Fglycoprotein.2Flipoprotein_terms_in_ChEBI ?

Daily digest emails for new/edited/obsoleted terms (obo-diff.html)

Is this working now?

Soft check for annotation to 'part' terms (nuclear_part, etc)

Is this in place now?

Cell cycle meeting

Feb. 28th + March 1st (are dates confirmed?).

Jane and Paola to follow up on logistics.

Participants? (Mary Dolan from MGI might be interested.)

Agenda?

@@ Line 12: / Line 12: @@
 This arose from this SF item [https://sourceforge.net/tracker/index.php?func=detail&aid=3601085&group_id=36855&atid=440764]. When terms are merged in OE, the subsets from the merged term are lost. Ideally we'd want them retained - is it possible to make this fix in OE? Or too time-consuming?
+===Single-step processes===
+Rama and Paul have voiced concerns about processes that have some overlap with functions e.g. phosphorylation/kinase. See email thread. We should discuss this.
 ===Follow-up on TermGenie free form===