Ontology meeting 2013-07-11: Difference between revisions

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See AI here: http://wiki.geneontology.org/index.php/Ontology_meeting_2013-02-14#Action_potential
See AI here: http://wiki.geneontology.org/index.php/Ontology_meeting_2013-02-14#Action_potential
===Cycles in GO===
I've spoken to Tony and it seems QuickGO only assumes GO is acyclic over is_a and part_of. Cycles over other relationships shouldn't cause a problem. We could try adding one to see what happens, but we would need to fix OE behaviour first.

Revision as of 08:05, 4 July 2013

Attendees:

Minutes:

Plan for importing reactions from Rhea into GO

See Enzymes_and_EC_mappings#Plan_of_Action

Let's discuss the plan, and figure out where we are wrt the xp pattern for these terms, and the xp set.

Follow-up: Hydrogen biosynthetic process

See background here http://wiki.geneontology.org/index.php/Ontology_meeting_2013-06-06#Follow-up:_metabolism_terms and Jane's email dated June 27th (subject Fwd: Re: Templates absent in Term Genie).

Suggestion: 'hydrogen generation' instead of 'hydrogen biosynthetic process'

Follow-up: Giardia terms

Request from UC Davis group.

Follow-up: Action potential

See AI here: http://wiki.geneontology.org/index.php/Ontology_meeting_2013-02-14#Action_potential

Cycles in GO

I've spoken to Tony and it seems QuickGO only assumes GO is acyclic over is_a and part_of. Cycles over other relationships shouldn't cause a problem. We could try adding one to see what happens, but we would need to fix OE behaviour first.