Ontology meeting 2014-06-05
Attendees:
Minutes:
Setting priorities for ontology group
As we didn't get a chance to do this yet we should discuss our priorities for the next quarter. The quarterly call for all GOC where we report on this is on June 18.
Formalising the localization branch.
- To discuss
- Do we need 'has agent' clause ?
- Are we comfortable with glossing the distinction between participant (movement/stabilisation) and participants (accumulation)?
Adding binding terms defined by activity of the enzyme they bind
Should we be doing this?
For example protein domain binding terms. Chris has made a set of test mappings and equivalence axioms:
http://viewvc.geneontology.org/viewvc/GO-SVN/trunk/experimental/domo/ http://viewvc.geneontology.org/viewvc/GO-SVN/trunk/experimental/x-domain.obo
Shall we make it a priority to implement these?
CHEBI
(Stemming from the 'secondary metabolite' merge issue) Jane to report from the CHEBI workshop.
Prefixing 'obsolete' to all obsolete classes
Done?
Change relation for metabolism terms
https://sourceforge.net/p/geneontology/ontology-requests/10881/
Links to annotation guidance
For background, see http://wiki.geneontology.org/index.php/Ontology_meeting_2014-05-08#Links_to_annotation_guidance
Chris added 'curator guidance link' RO_0002484.
To discuss today:
- how should we record the propagation rule (I,P,R) - axiom annotation
- using axioms rather than regexps
- consistent location of docs: go wiki, drupal, or go nuts?
Follow-ups from last week
http://wiki.geneontology.org/index.php/Ontology_meeting_2014-05-29