Ontology meeting 2014-09-11: Difference between revisions

Revision as of 11:25, 11 September 2014

Attendees:

Minutes: Paola

build-go-assert-inferences - Build # 90 - Still Failing!

Discuss in case it hasn't been solved already:

POTENTIAL REDUNDANT AXIOMS GO:0006606 'protein import into nucleus' part_of 'part_of' GO:0034504 'protein localization to nucleus' is also a simple SubClassOf.

 DOS: No problem I've been fixing in branch. Struggling to finish work on branch to merge back. Have now fixed in the trunk.  
 Assert inferences now passes.  See:  http://build.berkeleybop.org/job/build-go-assert-inferences-report/1120/console

WebProtege

The EBI Editors met with Matt Horridge yesterday. Report.

https://docs.google.com/document/d/1hXZs6V9Ex4zeBhqGjajsEbY50S94O5B1qxxHEghod6o/edit

Transport terms (carried over from last week)

Where are we with these action items?

As discussed at SF jamboree, we will:

1) display existing transport templates in a more user-friendly way;

2) add more templates, e.g. for 'transmembrane import' and 'transmembrane export'; David OS will specify more templates if needed.

We'll then email the GOC to alert curators that they may request new terms, use specific terms rather than generic ones, and move their existing annotations if they wish/can.

exocytosis/endocytosis - relationship to import/export

see https://sourceforge.net/p/geneontology/ontology-requests/10998/#b808

Also see 'endocytic import into cell'

@@ Line 31: / Line 31: @@
 We'll then email the GOC to alert curators that they may request new terms, use specific terms rather than generic ones, and move their existing annotations if they wish/can.
+== exocytosis/endocytosis - relationship to import/export ==
+see https://sourceforge.net/p/geneontology/ontology-requests/10998/#b808
+Also see 'endocytic import into cell'
 [[Category:Ontology]]
 [[Category:Meetings]]