Difference between revisions of "Ontology meeting 2016-09-22"

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The ticket says that this is fixed, but no one has seen the report.
The ticket says that this is fixed, but no one has seen the report.
===Follow-up: Modified proteins===
See background discussion here: http://wiki.geneontology.org/index.php/Ontology_meeting_2016-09-15#Modified_proteins
Some of us still need to comment on the draft proposal. Please do so. Keep in mind that not everyone attends the annotation calls and not everyone will be at USC. Link:
https://docs.google.com/document/d/17U1TD3n_QI9coCycJcOUBDa2nRf3ggPR-tKjDMa_ff8/edit


===Follow-up: How to report potential/necessary changes to annotations resulting from edits ===
===Follow-up: How to report potential/necessary changes to annotations resulting from edits ===

Revision as of 06:01, 21 September 2016

Attendees:

Regrets:

Minutes:

FAO update

  • FAO now has a home on github
  • We have a partial axiomatization of some fungal CCs and BPs using FAO - now in import chain
  • See Inferences Changes Report for: 2016-08-24 - e.g.
[Term]
+id: GO:0075251 ! uredospore formation
+is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process

So now which ontologies get precedence for axioms?

[Term]

id: GO:0048315
name: conidium formation
namespace: biological_process
def: "Formation of asexual, nonmotile spores in fungi, by conversion of hyphal elements or arising from specialized sporogenous cells." [ISBN:0963117211, PMID:2524423, PMID:9529886]
synonym: "conidia biosynthesis" EXACT []
synonym: "conidia formation" EXACT []
is_a: GO:0030436 ! asexual sporulation
is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis
intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis
intersection_of: results_in_formation_of CL:0000599 ! conidium

But conidium is also: FAO:0000024 conidium

Reinstate daily report of terms and stats

Ticket: https://github.com/geneontology/go-site/issues/217

The ticket says that this is fixed, but no one has seen the report.

Follow-up: Modified proteins

See background discussion here: http://wiki.geneontology.org/index.php/Ontology_meeting_2016-09-15#Modified_proteins

Some of us still need to comment on the draft proposal. Please do so. Keep in mind that not everyone attends the annotation calls and not everyone will be at USC. Link:

https://docs.google.com/document/d/17U1TD3n_QI9coCycJcOUBDa2nRf3ggPR-tKjDMa_ff8/edit

Follow-up: How to report potential/necessary changes to annotations resulting from edits

See background discussion here http://wiki.geneontology.org/index.php/Ontology_meeting_2016-09-15#How_to_report_potential.2Fnecessary_changes_to_annotations_resulting_from_edits

Table is here https://docs.google.com/spreadsheets/d/1nAquF0oXHU6d638Q97ZeQ7K7DOhuru84-rOMEL4A114/edit#gid=0. At time of writing, it still needs input from some groups - these have been reminded.

Follow-up: Metadata update - Move GO_REFs over to go-site

FYI, plan is here: https://github.com/geneontology/go-site/issues/214