Ontology meeting 2016-09-22
Attendees:
Regrets:
Minutes:
FAO update
- FAO now has a home on github
- We have a partial axiomatization of some fungal CCs and BPs using FAO - now in import chain
- See Inferences Changes Report for: 2016-08-24 - e.g.
[Term] +id: GO:0075251 ! uredospore formation +is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process
So now which ontologies get precedence for axioms?
[Term]
id: GO:0048315
name: conidium formation
namespace: biological_process
def: "Formation of asexual, nonmotile spores in fungi, by conversion of hyphal elements or arising from specialized sporogenous cells." [ISBN:0963117211, PMID:2524423, PMID:9529886]
synonym: "conidia biosynthesis" EXACT []
synonym: "conidia formation" EXACT []
is_a: GO:0030436 ! asexual sporulation
is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis
intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis
intersection_of: results_in_formation_of CL:0000599 ! conidium
But conidium is also: FAO:0000024 conidium
Reinstate daily report of terms and stats
Ticket: https://github.com/geneontology/go-site/issues/217
The ticket says that this is fixed, but no one has seen the report.
Follow-up: Modified proteins
See background discussion here: http://wiki.geneontology.org/index.php/Ontology_meeting_2016-09-15#Modified_proteins
Some of us still need to comment on the draft proposal. Please do so. Keep in mind that not everyone attends the annotation calls and not everyone will be at USC. Link:
https://docs.google.com/document/d/17U1TD3n_QI9coCycJcOUBDa2nRf3ggPR-tKjDMa_ff8/edit
Follow-up: How to report potential/necessary changes to annotations resulting from edits
See background discussion here http://wiki.geneontology.org/index.php/Ontology_meeting_2016-09-15#How_to_report_potential.2Fnecessary_changes_to_annotations_resulting_from_edits
Table is here https://docs.google.com/spreadsheets/d/1nAquF0oXHU6d638Q97ZeQ7K7DOhuru84-rOMEL4A114/edit#gid=0. At time of writing, it still needs input from some groups - these have been reminded.
Follow-up: Metadata update - Move GO_REFs over to go-site
FYI, plan is here: https://github.com/geneontology/go-site/issues/214