Ontology meeting 2019-07-01: Difference between revisions
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Jim is adding a check for obsolete terms in taxon constraints. It is important to check to see if an obsoleted term has been used in a taxon constraint. If it has, the term must be removed from the import file and we need to run docker to regenerate the taxon constraint file. | Jim is adding a check for obsolete terms in taxon constraints. It is important to check to see if an obsoleted term has been used in a taxon constraint. If it has, the term must be removed from the import file and we need to run docker to regenerate the taxon constraint file. | ||
===Who is this strange ontobot character?=== | |||
https://github.com/geneontology/go-ontology/pull/17555 | |||
===Other business=== | ===Other business=== | ||
Latest revision as of 09:53, 1 July 2019
Conference Line
See calendar for details
Agenda
Discussion topics
Moving to Protégé 5.5
Pascale:
- TO DO: Instructions
EC links
Harold and Pascale: Are we supposed to add dashes to partial ECs? This is not what we have been doing, and links with no dashed don't work. See for example mappings in http://amigo.geneontology.org/amigo/term/GO:0070005
Taxon Constraints and Obsoletions
Jim is adding a check for obsolete terms in taxon constraints. It is important to check to see if an obsoleted term has been used in a taxon constraint. If it has, the term must be removed from the import file and we need to run docker to regenerate the taxon constraint file.
Who is this strange ontobot character?
https://github.com/geneontology/go-ontology/pull/17555