Ontology meeting 2019-07-08
Conference Line
See calendar for details
Agenda
Discussion topics
Moving to Protégé 5.5
- Instructions: Protege5_5_setup_for_GO_Eds
What happened with the last ontology release?
Two problems:
- one tab character
- one consider term was obsolete
EC links follow up
Harold and Pascale: Are we supposed to add dashes to partial ECs? This is not what we have been doing, and links with no dashed don't work. See for example mappings in http://amigo.geneontology.org/amigo/term/GO:0070005 -> Harold was to check with MGI developers whether the partial ECs are still causing problems with mappings every
UniPathway links dead
What are we planning to do ? https://github.com/geneontology/go-site/issues/951 The plan discussed in Geneva, Dec 2018- ontology editors meeting is to move the UniPathway to OLS and link there. What do we need to do next ? (6,910,457 annotations in QuickGO linking to UniPathway) Action item: Pascale to edit the dbxref.yaml file.
Progress on ontobot
David and Jim have regenerated a lot of import files with ontobot, seems to be working great, David will start to assign specific people to different external ontologies.