Difference between revisions of "Ontology meeting 2021-03-15"

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(Created page with "=Attendees= * '''Group members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul, Eric * '''Present:''' * '''Regrets: ''' <hr> =Agenda...")
 
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==Slack demo==
Chris


<hr>
<hr>

Revision as of 04:23, 5 March 2021

Attendees

  • Group members: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul, Eric
  • Present:
  • Regrets:



Agenda

Announcements

  • New Rheas: we propose NOT to wait for the Rhea to be public to add it to a GO term. Too much waiting and going back. We need to close tickets.
  • Obsoletions: For terms with no annotations, no mappings, no xrefs, not in subsets: announce + obsolete immediately. We can always restore the term in the unlikely event that there is an objection


Slack demo

Chris


New relationships after using equivalent Rhea reaction

https://github.com/geneontology/go-ontology/issues/20839

Jim generated a ttl file.

*Discussion:

  • Created Logical definition
  • Plan: going forward, creating new terms:
    • add Rhea description in textual definition
    • bring EC mapping from Rhea
    • pull EC name automatically
    • retrospectively  ??''
  • Next step:
    • check if those logical definitions cause problems in inferences
    • Jim to check if some subsumptions are missing

id ranges file

https://raw.githubusercontent.com/geneontology/go-ontology/master/src/ontology/go-idranges.txt

  • do we need "The Original Set (OS) of GO terms"
  • do we need both the text and owl files?

merge GO:0019539 siderophore biosynthetic process from hydroxamic acid

https://github.com/geneontology/go-ontology/issues/20975

see the number of siderophores here: https://pdfs.semanticscholar.org/7946/e6339f9fbb60b054747ee4d706e53958b980.pdf?_ga=2.67985041.1432405903.1614609213-563084161.1614609213



xref types

Other Business

https://github.com/geneontology/go-ontology/projects/1


Minutes should be recorded on individual tickets and in individual projects