Ontology meeting 2021-03-15

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  • Group members: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul, Eric
  • Present:
  • Regrets:



  • New Rheas: Pascale & Harold propose NOT to wait for the Rhea to be public to add it to a GO term. Too much waiting and going back. We need to close tickets.
  • Obsoletions: For terms with no annotations, no mappings, no xrefs, not in subsets: announce + obsolete immediately. We can always restore the term in the unlikely event that there is an objection

Slack demo


New relationships after using equivalent Rhea reaction


Jim generated a ttl file.


  • Created Logical definition
  • Plan: going forward, creating new terms:
    • add Rhea description in textual definition
    • bring EC mapping from Rhea
    • pull EC name automatically
    • retrospectively  ??''
  • Next step:
    • check if those logical definitions cause problems in inferences
    • Jim to check if some subsumptions are missing

id ranges file


  • do we need "The Original Set (OS) of GO terms"
  • do we need both the text and owl files?

merge GO:0019539 siderophore biosynthetic process from hydroxamic acid


see the number of siderophores here: https://pdfs.semanticscholar.org/7946/e6339f9fbb60b054747ee4d706e53958b980.pdf?_ga=2.67985041.1432405903.1614609213-563084161.1614609213

xref types

Other Business


Minutes should be recorded on individual tickets and in individual projects