Ontology meeting 2021-04-26

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  • Group members: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul, Eric
  • Present:
  • Regrets:


RHEA mappings

Don't hesitate to ping people if you expect something but don't see it yet - Rhea reaction requested in January was stuck in the Rhea pipeline - Anne unblocked it; it should be available in about 2 months since this is the UniProt release schedule.

UniProt SPARQL endpoint

For Chris - the UniProt SPARQL endpoint has some issue This is the right number: https://www.rhea-db.org/rhea?query=uniprot%3A* = 9,125 reactions mapped 221,135 Swiss-Prot entries (stats in SPARQL endpoint are not correct).

RHEA status and future plans

See http://wiki.geneontology.org/index.php/Ontology_meeting_2021-04-19#RHEA_status_and_future_plans Action items:

    • AI We need to identify Rhea reactions linked to entries but WITHOUT GO mappings --->>> next ones to map to GO (or create reactions)
    • AI: fix incorrect mappings reported by Anne - July 21, 2020
    • AI: fix errors reported on Oct 1, 2019

Other items


  • Filter out Rhea xrefs that are not valid (Jim)
  • Should obsolete ECs be removed from obsoleted terms Y/N

Other Business