Ontology meeting 2022-09-26: Difference between revisions

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(Created page with "* '''Group members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul * '''Present:''' * '''Regrets: ''' =Announcements= =Editors discussion items= ==Stem cell taxonomic range== https://github.com/geneontology/go-ontology/issues/23764 =='Nested' regulation== https://github.com/geneontology/go-ontology/issues/12976 I think we are obsoleting these terms? "regulation of X by regulation of Y" We still have 'regulation of x by regulati...")
 
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=Editors discussion items=
=Editors discussion items=
==Continue discussion on relations==
* Pascale
* Started to implement the [https://docs.google.com/document/d/1xW-bG-1lWwY9KbjunpRdYUaMxlBNO1w2-XTkWoLaQN4/edit proposal] we presented last week
* Some questions:
*# We had proposed to change the label of 'directly provides input for' to 'provides input for' ; however I would like to confirm that we really want to do this, as this would result in:
*#* 'causally upstream of or within, positive effect'
*#** 'transitively provides input for'
*#*** provides input for
Doesn't 'provides input for' sound more general than 'transitively' and 'directly'?


==Stem cell taxonomic range==
==Stem cell taxonomic range==

Revision as of 04:35, 26 September 2022

  • Group members: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul
  • Present:
  • Regrets:

Announcements

Editors discussion items

Continue discussion on relations

  • Pascale
  • Started to implement the proposal we presented last week
  • Some questions:
    1. We had proposed to change the label of 'directly provides input for' to 'provides input for' ; however I would like to confirm that we really want to do this, as this would result in:
      • 'causally upstream of or within, positive effect'
        • 'transitively provides input for'
          • provides input for

Doesn't 'provides input for' sound more general than 'transitively' and 'directly'?


Stem cell taxonomic range

https://github.com/geneontology/go-ontology/issues/23764

'Nested' regulation

https://github.com/geneontology/go-ontology/issues/12976 I think we are obsoleting these terms? "regulation of X by regulation of Y" We still have 'regulation of x by regulation of release of sequestered calcium ions' (maybe others)

Hindgut contraction

https://github.com/geneontology/go-ontology/issues/11758 Maybe we only need 'smooth muscle contraction' and the we can use 'occurs in' the appropriate anatomical structure?

Follow up on previous discussion topics

Regulation of a process in another organism

  • AI (Pascale) should create a new triad of relations for linking the modulation of a process in another organism- for eg, modulates process in another organism (something along these lines)
  • AI (Pascale) Open a RO ticket to make in_taxon over regulates transitive

Next jamboree

Date & topic

For a future call/project