Ontology meeting 2022-10-03: Difference between revisions
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(Created page with "* '''Group members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul * '''Present:''' * '''Regrets: ''' =Announcements= =Editors discussion items= ==Relations== Pascale [https://github.com/oborel/obo-relations/issues/631 RO Ticket for directly positively regulates and activates & directly negatively regulates and inhibits] ==Topics postponed from previous calls== ===Stem cell taxonomic range=== https://github.com/geneontolog...") |
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=Editors discussion items= | =Editors discussion items= | ||
==Tickets by ontology editors== | |||
==Relations== | * Harold: | ||
* Raymond: | |||
==Follow up on MF to MF Relations== | |||
Pascale | Pascale | ||
[https://github.com/oborel/obo-relations/issues/631 RO Ticket for directly positively regulates and activates & directly negatively regulates and inhibits] | [https://github.com/oborel/obo-relations/issues/631 RO Ticket for directly positively regulates and activates & directly negatively regulates and inhibits] | ||
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https://github.com/geneontology/go-ontology/issues/12976 | https://github.com/geneontology/go-ontology/issues/12976 | ||
I think we are obsoleting these terms? "regulation of X by regulation of Y" | I think we are obsoleting these terms? "regulation of X by regulation of Y" | ||
We still have 'regulation of x by regulation of release of sequestered calcium ions' (maybe others) | We still have 'regulation of x by regulation of release of sequestered calcium ions' (maybe others) | ||
=Next jamboree= | =Next jamboree= | ||
Revision as of 08:25, 27 September 2022
- Group members: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul
- Present:
- Regrets:
Announcements
Editors discussion items
Tickets by ontology editors
- Harold:
- Raymond:
Follow up on MF to MF Relations
Topics postponed from previous calls
Stem cell taxonomic range
https://github.com/geneontology/go-ontology/issues/23764
'Nested' regulation
https://github.com/geneontology/go-ontology/issues/12976 I think we are obsoleting these terms? "regulation of X by regulation of Y" We still have 'regulation of x by regulation of release of sequestered calcium ions' (maybe others)
Next jamboree
Date & topic
For a future call/project
Follow up - Regulation of a process in another organism
- AI (Pascale) should create a new triad of relations for linking the modulation of a process in another organism- for eg, modulates process in another organism (something along these lines)
- AI (Pascale) Open a RO ticket to make in_taxon over regulates transitive
- https://wiki.geneontology.org/Ontology_meeting_2022-07-18#Glycosylation_ontology
- Ordering of subset/ribbon terms: make a tsv file - we just need to know who needs this; would Alliance, UniProt use it?
- COB: Jim and Chris could give an overview of COB + biological phase superclass https://github.com/OBOFoundry/COB/issues/51