Ontology meeting 2022-10-03: Difference between revisions
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* GOC meeting is the week after next (Oct 11-13) - virtual | * GOC meeting is the week after next (Oct 11-13) - virtual | ||
* The following week will be a no GO calls week (week of Sept 17th) | * The following week will be a no GO calls week (week of Sept 17th) | ||
* ontology update: | |||
=GH tracker - ontology repo - overview of tickets topics= | =GH tracker - ontology repo - overview of tickets topics= | ||
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Pascale | Pascale | ||
[https://github.com/oborel/obo-relations/issues/631 RO Ticket for directly positively regulates and activates & directly negatively regulates and inhibits] | [https://github.com/oborel/obo-relations/issues/631 RO Ticket for directly positively regulates and activates & directly negatively regulates and inhibits] | ||
==Topics postponed from previous calls== | ==Topics postponed from previous calls== | ||
Revision as of 09:58, 3 October 2022
- Group members: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul
- Present:
- Regrets:
Announcements
- GOC meeting is the week after next (Oct 11-13) - virtual
- The following week will be a no GO calls week (week of Sept 17th)
- ontology update:
GH tracker - ontology repo - overview of tickets topics
Tickets classified by some 'biological' topic https://docs.google.com/spreadsheets/d/1egN8wd7AbEStBp3Za19jEFYOUyWOVL8DesRFviGlyZU/edit#gid=0
Editors discussion items
Tickets by ontology editors
- Harold:
- Raymond:
- Follow up on chorion issue
Follow up on MF to MF Relations
Topics postponed from previous calls
Stem cell taxonomic range
https://github.com/geneontology/go-ontology/issues/23764
'Nested' regulation
https://github.com/geneontology/go-ontology/issues/12976 I think we are obsoleting these terms? "regulation of X by regulation of Y" We still have 'regulation of x by regulation of release of sequestered calcium ions' (maybe others)
Next jamboree
Date & topic
For a future call/project
Follow up - Regulation of a process in another organism
- AI (Pascale) should create a new triad of relations for linking the modulation of a process in another organism- for eg, modulates process in another organism (something along these lines)
- AI (Pascale) Open a RO ticket to make in_taxon over regulates transitive
- https://wiki.geneontology.org/Ontology_meeting_2022-07-18#Glycosylation_ontology
- Ordering of subset/ribbon terms: make a tsv file - we just need to know who needs this; would Alliance, UniProt use it?
- COB: Jim and Chris could give an overview of COB + biological phase superclass https://github.com/OBOFoundry/COB/issues/51