Ontology meeting 2022-10-31

• Group members: Pascale, Harold, Raymond, Val, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul
• Present:
• Regrets:

Editors discussion items

AI: RO release

Are the ShEx rules the "source of truth" for the ontology as well as annotation?

• AI: Kimberly to create a ticket to get all relations used in the ontology
• We may want to distinguish LD from asserted axioms?

GO practice for obsoletion versus merges

• Chris prefers we obsolete terms and use REPLACED BY rather than merging terms, which seems to confuse users.
• Are there objections in the group?
• We can email go-consortium to as whether other people have issues with that; any other group we should notify? obo mailing list?

Design patterns

NAD, NADH, NADPH processes logical definitions inconsistencies

Jim https://github.com/geneontology/go-ontology/issues/24279

regulation of pH

Jim https://github.com/geneontology/go-ontology/pull/24256/files

cell morphogenesis

Causing DP issues: https://github.com/geneontology/go-ontology/issues/24299

Could we say that for cells, morphogenesis is the same as differentiation?

regulation of biological quality

Add axioms for regulation of biological quality